RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TECTAO75443 2155 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 ZNHIT1O43257 154 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 FBXO24O75426 580 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 CST4P01036 141 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 CELA3AP09093 270 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 NME2P22392 152 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 NPBWR2P48146 333 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 SPSB4Q96A44 273 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 SMIM8Q96KF7 97 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 SIGLEC12Q96PQ1 595 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 FAM173AQ9BQD7 235 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 TINAGQ9UJW2 476 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 DOCK7Q96N67 2140 aa11.36□□□□□ -0.59
LDLR-203ENST00000535915 FUT3P21217 361 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 GLP1RP43220 463 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 KCNJ3P48549 501 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 TMEM33P57088 247 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 ABHD17BQ5VST6 288 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 LYZL2Q7Z4W2 148 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 GALNT14Q96FL9 552 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 ADAT1Q9BUB4 502 aaKnown RBP11.35□□□□□ -0.59
LDLR-203ENST00000535915 PAPOLGQ9BWT3 736 aaKnown RBP11.35□□□□□ -0.59
LDLR-203ENST00000535915 HES7Q9BYE0 225 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 CALHM2Q9HA72 323 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 KMT2EQ8IZD2 1858 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 EIF3GO75821 320 aaKnown RBP eCLIP11.35□□□□□ -0.59
LDLR-203ENST00000535915 NEURL1O76050 574 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 JTBO76095 146 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 IFNA4P05014 189 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 CCL2P13500 99 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 NRN1LQ496H8 165 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 TUSC5Q8IXB3 177 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 ZFP82Q8N141 532 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 OR56B2PQ8NGI1 322 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 OR11L1Q8NGX0 322 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 SYT3Q9BQG1 590 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 SUCNR1Q9BXA5 334 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 BCL2L14Q9BZR8 327 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 TLNRD1Q9H1K6 362 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 ZNF703Q9H7S9 590 aaPredicted RBP11.35□□□□□ -0.59
LDLR-203ENST00000535915 RHOFQ9HBH0 211 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 GSN-AS1Q9NRJ2 163 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 B4GALT7Q9UBV7 327 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 STARD10Q9Y365 291 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 ARHGAP21Q5T5U3 1957 aa11.35□□□□□ -0.59
LDLR-203ENST00000535915 MED13Q9UHV7 2174 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 DIRAS3O95661 229 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 MBPP02686 304 aaPredicted RBP11.34□□□□□ -0.59
LDLR-203ENST00000535915 S100A6P06703 90 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 LPAR6P43657 344 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 LHX2P50458 406 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 HERV-K104P61576 105 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 TMEM211Q6ICI0 200 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 Q6ZPA2 131 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 LIAT1Q6ZQX7 453 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 SLC16A13Q7RTY0 426 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 CBLN2Q8IUK8 224 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 MOB3AQ96BX8 217 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 UQCC1Q9NVA1 299 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 AMDHD2Q9Y303 409 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 FAM96BQ9Y3D0 163 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 FRYQ5TBA9 3013 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 IGKV3D-15A0A087WSY6 115 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 C5orf49A4QMS7 147 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 FAM166BA8MTA8 275 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 C9orf172C9J069 976 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 HLA-HP01893 362 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 SPP1P10451 314 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 TMEM268Q5VZI3 342 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 CLEC9AQ6UXN8 241 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 COLCA1Q6ZS62 124 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 LILRB2Q8N423 598 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 ARRDC1-AS1Q9H2J1 176 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 PLEKHA2Q9HB19 425 aa11.34□□□□□ -0.59
LDLR-203ENST00000535915 E5RGE8 158 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 PHF1O43189 567 aaPredicted RBP11.33□□□□□ -0.59
LDLR-203ENST00000535915 NDUFS6O75380 124 aaKnown RBP11.33□□□□□ -0.59
LDLR-203ENST00000535915 SNAPINO95295 136 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 SYNGR4O95473 234 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 F12P00748 615 aaPredicted RBP11.33□□□□□ -0.59
LDLR-203ENST00000535915 AADACP22760 399 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 SULT1A2P50226 295 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 C10orf91Q5T1B1 145 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 LDLRAD3Q86YD5 345 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 SPAG16Q8N0X2 631 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 GLYATL2Q8WU03 294 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 DDA1Q9BW61 102 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 PRRG4Q9BZD6 226 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 LINC00470Q9BZP3 86 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 FOXJ2Q9P0K8 574 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 CARHSP1Q9Y2V2 147 aaKnown RBP11.33□□□□□ -0.59
LDLR-203ENST00000535915 NSG2Q9Y328 171 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 KNTC1P50748 2209 aa11.33□□□□□ -0.59
LDLR-203ENST00000535915 GAPDHP04406 335 aaKnown RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 BCL3P20749 454 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 MPLP40238 635 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 MAGEA5P43359 124 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 CAV2P51636 162 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 FOXG1P55316 489 aaPredicted RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 CLDN18P56856 261 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms