RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 C9orf139Q6ZV77 190 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 MFSD4AQ8N468 514 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 BPIFB2Q8N4F0 458 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 OR5D18Q8NGL1 313 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 NDNFQ8TB73 568 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 THRSPQ92748 146 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 TBX15Q96SF7 602 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 SLC6A7Q99884 636 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 PCGF1Q9BSM1 259 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 SUCNR1Q9BXA5 334 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 SLIRPQ9GZT3 109 aaKnown RBP12.4□□□□□ -0.42
CPSF1-208ENST00000532560 FAM234AQ9H0X4 552 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 DCSTAMPQ9H295 470 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 ELL3Q9HB65 397 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-208ENST00000532560 ZNF69Q9UC07 566 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 TRBV5-7A0A0A0MS05 114 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 PNMA8CA0A1B0GUJ8 204 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 MAGEB3O15480 346 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 ANGPTL7O43827 346 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 ZNF737O75373 536 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 GPX5O75715 221 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 ALDOBP05062 364 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 CHRM2P08172 466 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 PPP5CP53041 499 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 BPIFB3P59826 476 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 VBP1P61758 197 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 ARF6P62330 175 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 ZNF45Q02386 682 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 COL10A1Q03692 680 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 OXA1LQ15070 435 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 ZNF146Q15072 292 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 PDCD1Q15116 288 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 SPHARQ15513 63 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 TRIM16LQ309B1 348 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 CMTM4Q8IZR5 234 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 OR52N4Q8NGI2 321 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 MCFD2Q8NI22 146 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 OR14A2Q96R54 314 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 OR5M11Q96RB7 305 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 TMEM138Q9NPI0 162 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 ONECUT1Q9UBC0 465 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 IL36RNQ9UBH0 155 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 CKLFQ9UBR5 152 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 FBN3Q75N90 2809 aa12.39□□□□□ -0.43
CPSF1-208ENST00000532560 A0A1W2PQ09 198 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 K7N7A8 449 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 M0R1W7 72 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 HAND1O96004 215 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 TK1P04183 234 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 HNRNPCP07910 306 aaKnown RBP eCLIP12.38□□□□□ -0.43
CPSF1-208ENST00000532560 PRKACAP17612 351 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 IGFBP3P17936 291 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-208ENST00000532560 MAPK3P27361 379 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-208ENST00000532560 BDKRB2P30411 391 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 SOX6P35712 828 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 HILS1P60008 231 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 NCS1P62166 190 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 GPR157Q5UAW9 335 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 ASCC1Q8N9N2 400 aaKnown RBP12.38□□□□□ -0.43
CPSF1-208ENST00000532560 PXT1Q8NFP0 134 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 C22orf15Q8WYQ4 148 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 DERL3Q96Q80 235 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 PEX16Q9Y5Y5 336 aa12.38□□□□□ -0.43
CPSF1-208ENST00000532560 hCG_2014768A0A024R1R8 64 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 IGHV3OR16-10A0A075B7F0 116 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 J3QRK9 145 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 CCRL2O00421 344 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 GABRPO00591 440 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 TMEM225BP0DP42 221 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 S100A5P33763 92 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 BCAP31P51572 246 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 RPL31P62899 125 aaKnown RBP12.37□□□□□ -0.43
CPSF1-208ENST00000532560 GPR50Q13585 617 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 MED22Q15528 200 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 DDI2Q5TDH0 399 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 ELP2Q6IA86 826 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 METAP1DQ6UB28 335 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-208ENST00000532560 C1orf122Q6ZSJ8 110 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 VMO1Q7Z5L0 202 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 OR8H2Q8N162 312 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 TNFAIP8L1Q8WVP5 186 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 TMEM158Q8WZ71 300 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 ORAI1Q96D31 301 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 JMJD8Q96S16 334 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 GPER1Q99527 375 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 MDFIQ99750 246 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 MS4A7Q9GZW8 240 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-208ENST00000532560 UNKLQ9H9P5 680 aaKnown RBP12.37□□□□□ -0.43
CPSF1-208ENST00000532560 C19orf12Q9NSK7 152 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 GLS2Q9UI32 602 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 FOXJ3Q9UPW0 622 aa12.37□□□□□ -0.43
CPSF1-208ENST00000532560 FBN1P35555 2871 aaKnown RBP12.37□□□□□ -0.43
CPSF1-208ENST00000532560 TRAV8-7A0A075B6U6 113 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 CENPVL3A0A0U1RRI6 287 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 TMEM82A0PJX8 343 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 FUOMA2VDF0 154 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 RNF212BA8MTL3 300 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 GADD45AP24522 165 aa12.36□□□□□ -0.43
CPSF1-208ENST00000532560 ZNF93P35789 620 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-208ENST00000532560 ETV6P41212 452 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms