RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 GLAP06280 429 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A15PP0C7V4 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A13PP0C7W8 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A14PP0C7W9 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A24PP0C7X0 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 MUC1P15941 1255 aaPredicted RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 COL8A2P25067 703 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 LMO1P25800 156 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 TNFSF8P32971 234 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 S100A5P33763 92 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 NPBWR2P48146 333 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 CLDN12P56749 244 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FGF12P61328 243 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 ZNF146Q15072 292 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 P2RY14Q15391 338 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 HFEQ30201 348 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SLC22A6Q4U2R8 563 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SPRNQ5BIV9 151 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 PRR31Q5SQ13 230 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 ATPAF1Q5TC12 328 aaPredicted RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 PRAMEF6Q5VXH4 476 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 RAB12Q6IQ22 244 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 METAP1DQ6UB28 335 aaPredicted RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 ZNF826PQ6ZT77 177 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 LINC00596Q86U02 117 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 MOGAT3Q86VF5 341 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 LRRC28Q86X40 367 aaPredicted RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 C1orf87Q8N0U7 546 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM58AQ8N1B3 248 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 GCSAMQ8N6F7 178 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 OR5D18Q8NGL1 313 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 OR6Q1Q8NGQ2 317 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 C15orf40Q8WUR7 153 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 DVL3Q92997 716 aaPredicted RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 NRIP2Q9BQI9 281 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 NUDT16L1Q9BRJ7 211 aaKnown RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 TM2D1Q9BX74 207 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 CACNG6Q9BXT2 260 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 CXorf56Q9H5V9 222 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 ELL3Q9HB65 397 aaPredicted RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 HES4Q9HCC6 221 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 DIABLOQ9NR28 239 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 UFSP2Q9NUQ7 469 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 NPTNQ9Y639 398 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SETD2Q9BYW2 2564 aaPredicted RBP6.2□□□□□ -1.42
CD44-228ENST00000528455 TANC2Q9HCD6 1990 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 NIPBLQ6KC79 2804 aaeCLIP6.2□□□□□ -1.42
CD44-228ENST00000528455 A6NLC8 198 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 TMEM178BH3BS89 294 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 SH2D1BO14796 132 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 RGS5O15539 181 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 XRCC3O43542 346 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 CDC14BO60729 498 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 HPGDSO60760 199 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 CRTAPO75718 401 aaPredicted RBP6.2□□□□□ -1.42
CD44-228ENST00000528455 KNG1P01042 644 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 SFTPBP07988 381 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 CD99P14209 185 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 DAOP14920 347 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 MGMTP16455 207 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 ELK1P19419 428 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 BCL3P20749 454 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 GLRA1P23415 457 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 CPT2P23786 658 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 PTBP1P26599 531 aaKnown RBP eCLIP6.2□□□□□ -1.42
CD44-228ENST00000528455 ETV6P41212 452 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 PITPNBP48739 271 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 RPS27AP62979 156 aaKnown RBP6.2□□□□□ -1.42
CD44-228ENST00000528455 ZNF45Q02386 682 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 UNC119Q13432 240 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 ARL6IP1Q15041 203 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 KCNJ8Q15842 424 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 DEFB113Q30KQ7 82 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 SPIN3Q5JUX0 258 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 UBE2NLQ5JXB2 153 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 FIP1L1Q6UN15 594 aaKnown RBP6.2□□□□□ -1.42
CD44-228ENST00000528455 ACP7Q6ZNF0 438 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 TGIF2LYQ8IUE0 185 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 CMTM4Q8IZR5 234 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 SAMD12Q8N8I0 201 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 TMEM104Q8NE00 496 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 OR56B1Q8NGI3 324 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 OR5H6Q8NGV6 325 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 LRRC29Q8WV35 223 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 CCL17Q92583 94 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 SLAMF9Q96A28 289 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 PHF21AQ96BD5 680 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 WDFY2Q96P53 400 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 CCL19Q99731 98 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 SOSTQ9BQB4 213 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 C6orf62Q9GZU0 229 aaPredicted RBP6.2□□□□□ -1.42
CD44-228ENST00000528455 DNTTIP1Q9H147 329 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 LPAR5Q9H1C0 372 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 MIXL1Q9H2W2 232 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 IFT22Q9H7X7 185 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 MYOZ1Q9NP98 299 aaPredicted RBP6.2□□□□□ -1.42
CD44-228ENST00000528455 TMEM106BQ9NUM4 274 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 RHBDL2Q9NX52 303 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 GLS2Q9UI32 602 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 HSF4Q9ULV5 492 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms