RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CREB3L1Q96BA8 519 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 TAMM41Q96BW9 452 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 ISOC1Q96CN7 298 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 RCN3Q96D15 328 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 NSL1Q96IY1 281 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 HOPXQ9BPY8 73 aaPredicted RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 NIPAL2Q9H841 368 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 CYB5R1Q9UHQ9 305 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 GTF2A1LQ9UNN4 478 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 BAIAP2Q9UQB8 552 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 POLR1DQ9Y2S0 133 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 STARD10Q9Y365 291 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 SH3GLB1Q9Y371 365 aa3.11□□□□□ -1.91
USP54-217ENST00000498213 FAM32AQ9Y421 112 aaKnown RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 TBL2Q9Y4P3 447 aaKnown RBP3.11□□□□□ -1.91
USP54-217ENST00000498213 DOCK11Q5JSL3 2073 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 IGLV5-45A0A087WSX0 123 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 DHRS7CA6NNS2 312 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 LRRN3E7EW58 273 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 CXCR6O00574 342 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 BHLHE40O14503 412 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 NPFFO15130 113 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 LDLRAD4O15165 306 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 MLNRO43193 412 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ADAM20O43506 726 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 SLC16A7O60669 478 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 RAMP3O60896 148 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 PTP4A3O75365 173 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 RENP00797 406 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 C1QCP02747 245 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 AMBPP02760 352 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ACSM4P0C7M7 580 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 FAM106CPP0CH98 169 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 CD28P10747 220 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 IFI30P13284 250 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 CTLA4P16410 223 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ZNF182P17025 639 aaPredicted RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 CALB2P22676 271 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 CBLP22681 906 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 AQP1P29972 269 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 PRDX6P30041 224 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 SLC6A6P31641 620 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 GGT2P36268 569 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 VEGFCP49767 419 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ERFP50548 548 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 NUDT2P50583 147 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 SLC35A2P78381 396 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ELF3P78545 371 aaPredicted RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 TRAP1Q12931 704 aaKnown RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 MAB21L1Q13394 359 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 IL18R1Q13478 541 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 KRR1Q13601 381 aaKnown RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 OR8G1Q15617 311 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 BAK1Q16611 211 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 LRRC75BQ2VPJ9 315 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ZNF876PQ49A33 203 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 IFI44LQ53G44 452 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 AGKQ53H12 422 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 CCDC92Q53HC0 331 aaPredicted RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 CYBRD1Q53TN4 286 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 PAGE3Q5JUK9 113 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 SPATA46Q5T0L3 261 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 MINOS1Q5TGZ0 78 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 NANOGP8Q6NSW7 305 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 DEGS2Q6QHC5 323 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 SMARCD3Q6STE5 483 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 HACD2Q6Y1H2 254 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ZNF730Q6ZMV8 503 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 BTN2A1Q7KYR7 527 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 SBSPONQ8IVN8 264 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 NRMQ8IXM6 262 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 KLHDC1Q8N7A1 406 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 CCDC54Q8NEL0 328 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 SLC26A10Q8NG04 563 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 OR2T12Q8NG77 320 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 OR51G2Q8NGK0 314 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 OR52I2Q8NH67 350 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 OR10A6Q8NH74 314 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 THAP6Q8TBB0 222 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 MALSU1Q96EH3 234 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 GRAMD2BQ96HH9 432 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ST6GAL2Q96JF0 529 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 MICU1Q9BPX6 476 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 BTBD10Q9BSF8 475 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 DCTN5Q9BTE1 182 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 ADAT1Q9BUB4 502 aaKnown RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 SYT4Q9H2B2 425 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 OR51B6Q9H340 312 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 IKZF5Q9H5V7 419 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 DCAF13Q9NV06 445 aaKnown RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.1□□□□□ -1.91
USP54-217ENST00000498213 SAMD4AQ9UPU9 718 aaKnown RBP3.1□□□□□ -1.91
USP54-217ENST00000498213 SIGLEC7Q9Y286 467 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 MINOS1-NBL1R4GNA1 71 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 PKHD1P08F94 4074 aa3.1□□□□□ -1.91
USP54-217ENST00000498213 A0A087WUU8 490 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 IGLV1-36A0A0B4J1U3 117 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 IGKV1D-43A0A0B4J1Z2 117 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 A0A0U1RQK1 487 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 GGT3PA6NGU5 568 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms