RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TMED9Q9BVK6 235 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 C19orf24Q9BVV8 132 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 CHST6Q9GZX3 395 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 SEBOXQ9HB31 216 aaPredicted RBP13.1□□□□□ -0.31
LIME1-209ENST00000494776 TRBV5-7A0A0A0MS05 114 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 TMEM82A0PJX8 343 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 DEGS1O15121 323 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 ZNF737O75373 536 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 HTR3BO95264 441 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 OR2H2O95918 312 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 MAS1P04201 325 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 IGFBP3P17936 291 aaPredicted RBP13.09□□□□□ -0.31
LIME1-209ENST00000494776 PTGFRP43088 359 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 OR3A4PP47883 348 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 PRB3Q04118 309 aaPredicted RBP13.09□□□□□ -0.31
LIME1-209ENST00000494776 DOC2BQ14184 412 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 IRF3Q14653 427 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 NCR3LG1Q68D85 454 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 C17orf107Q6ZR85 190 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 PHC2Q8IXK0 858 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 UFD1Q92890 307 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 ZNF48Q96MX3 618 aaPredicted RBP13.09□□□□□ -0.31
LIME1-209ENST00000494776 DERL3Q96Q80 235 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 NKX3-1Q99801 234 aaPredicted RBP13.09□□□□□ -0.31
LIME1-209ENST00000494776 METTL9Q9H1A3 318 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 FOXJ3Q9UPW0 622 aa13.09□□□□□ -0.31
LIME1-209ENST00000494776 LSM2Q9Y333 95 aaKnown RBP13.09□□□□□ -0.31
LIME1-209ENST00000494776 TRAV8-7A0A075B6U6 113 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 MDFIC2A0A1B0GVS7 189 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 A0A1W2PRD5 423 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 A0A1W2PRF3 423 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 A0A1W2PRM7 423 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 GPX5O75715 221 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 CDRT1O95170 752 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 CSTBP04080 98 aaKnown RBP13.08□□□□□ -0.32
LIME1-209ENST00000494776 FSTP19883 344 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 PRTN3P24158 256 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 DLX1P56177 255 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 KLRD1Q13241 179 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 DEFB112Q30KQ8 113 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 ACSM3Q53FZ2 586 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 METAP1DQ6UB28 335 aaPredicted RBP13.08□□□□□ -0.32
LIME1-209ENST00000494776 JAGN1Q8N5M9 183 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 OR10K1Q8NGX5 313 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 ZFAND2BQ8WV99 257 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 DUX5Q96PT3 197 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 NOX4Q9NPH5 578 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 ESM1Q9NQ30 184 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 FAM96BQ9Y3D0 163 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 STAB1Q9NY15 2570 aa13.08□□□□□ -0.32
LIME1-209ENST00000494776 FBN1P35555 2871 aaKnown RBP13.07□□□□□ -0.32
LIME1-209ENST00000494776 hADV38S2A0JD32 116 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 RNASEK-C17orf49H0YIS7 233 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 MGST3O14880 152 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 PSPNO60542 156 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 CCL3L1P16619 93 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 MAP2K4P45985 399 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 UBA52P62987 128 aaKnown RBP13.07□□□□□ -0.32
LIME1-209ENST00000494776 ACTG1P63261 375 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 GPR50Q13585 617 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 ZNF273Q14593 569 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 LIPKQ5VXJ0 399 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 ELP2Q6IA86 826 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 ZDHHC22Q8N966 263 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 CHST4Q8NCG5 386 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 OR4S1Q8NGB4 309 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 TCF7L1Q9HCS4 588 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 PCDHB16Q9NRJ7 776 aa13.07□□□□□ -0.32
LIME1-209ENST00000494776 MEX3AA1L020 520 aaKnown RBP13.06□□□□□ -0.32
LIME1-209ENST00000494776 FUOMA2VDF0 154 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 MAGEA13PA6NCF6 341 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 DNAJC9-AS1A6NH13 148 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 DENRO43583 198 aaKnown RBP13.06□□□□□ -0.32
LIME1-209ENST00000494776 SERPINA2P20848 420 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 OR3A1P47881 315 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 ERVFRD-1P60508 538 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 MEF2CQ06413 473 aaPredicted RBP13.06□□□□□ -0.32
LIME1-209ENST00000494776 ASCL4Q6XD76 172 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 TRAPPC6BQ86SZ2 158 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 TPRX1Q8N7U7 411 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.06□□□□□ -0.32
LIME1-209ENST00000494776 FAM216AQ8WUB2 273 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 TMEM203Q969S6 136 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 SLC25A28Q96A46 364 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 PPA2Q9H2U2 334 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 HEXA-AS1Q9H8Q6 139 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 ZMAT3Q9HA38 289 aaKnown RBP13.06□□□□□ -0.32
LIME1-209ENST00000494776 ISYNA1Q9NPH2 558 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 ING3Q9NXR8 418 aa13.06□□□□□ -0.32
LIME1-209ENST00000494776 SF3B6Q9Y3B4 125 aaKnown RBP13.06□□□□□ -0.32
LIME1-209ENST00000494776 A0A0G2JK05 382 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 A0A0U1RQK1 487 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 HSPB6O14558 160 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 NPFFO15130 113 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 PIN1P1O15428 100 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 ZNF780AO75290 641 aaPredicted RBP13.05□□□□□ -0.32
LIME1-209ENST00000494776 ZNF728P0DKX0 622 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 LMO1P25800 156 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 UBE2E1P51965 193 aa13.05□□□□□ -0.32
LIME1-209ENST00000494776 MLLT11Q13015 90 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms