RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FBP1P09467 338 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 OR5H8P0DN80 308 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 CAMLGP49069 296 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 FABP9Q0Z7S8 132 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 SLC16A14Q7RTX9 510 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 NTNG2Q96CW9 530 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 RARRES2Q99969 163 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 CNTNAP3Q9BZ76 1288 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 RGCCQ9H4X1 137 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 FOXJ2Q9P0K8 574 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 ATPIF1Q9UII2 106 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 ZNF587BE7ETH6 402 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 CYB561P49447 251 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 FOXG1P55316 489 aaPredicted RBP14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 ZNF92Q03936 586 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 RSU1Q15404 277 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 ABCA11PQ4W5N1 156 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 SGPP2Q8IWX5 399 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 SKA3Q8IX90 412 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 FAM213BQ8TBF2 198 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 PSMF1Q92530 271 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 SIGLEC12Q96PQ1 595 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 AQP10Q96PS8 301 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 PRRX2Q99811 253 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 PLA2G3Q9NZ20 509 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 R4GN57 208 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 TRBV6-7A0A0A0MS04 114 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 GJE1A6NN92 205 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 PPP1CCP36873 323 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 RAB35Q15286 201 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 P4HA3Q7Z4N8 544 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 OR2V1Q8NHB1 315 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 IFT22Q9H7X7 185 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 LRFN1Q9P244 771 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 AK3Q9UIJ7 227 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 DMXL1Q9Y485 3027 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 A0A1W2PNU3 283 aaPredicted RBP14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 C7orf77A4D0Y5 90 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 FAM166BA8MTA8 275 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 GEMIN2O14893 280 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 MBPP02686 304 aaPredicted RBP14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 PLA2G5P39877 138 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 LHFPL1Q86WI0 220 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 HIST1H2BAQ96A08 127 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 WNT5BQ9H1J7 359 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 MMP24Q9Y5R2 645 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 IGKV1-12A0A0C4DH73 117 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 FIGNL2A6NMB9 653 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 ZNF727A8MUV8 499 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 IGKV1D-12P01611 117 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 FCGR3AP08637 254 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 C3AR1Q16581 482 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 TMEM217Q8N7C4 229 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 PIGCQ92535 297 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 Q96M66 194 aa14.3□□□□□ -0.12
CCDC88B-210ENST00000494566 EIF2S3LQ2VIR3 472 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 PDZD11Q5EBL8 140 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 RPUSD3Q6P087 351 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 SLC22A25Q6T423 547 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 LINC00696Q6ZRV3 163 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 EMG1Q92979 244 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 ADGRG7Q96K78 797 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 SMIM8Q96KF7 97 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 C1orf123Q9NWV4 160 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 C1orf196B1AJZ1 125 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 C9orf172C9J069 976 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 IFNA21P01568 189 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 RAB5BP61020 215 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 ACTBL2Q562R1 376 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 IL34Q6ZMJ4 242 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 BORCS8Q96FH0 119 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 IER2Q9BTL4 223 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 SF3B5Q9BWJ5 86 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 CACFD1Q9UGQ2 172 aa14.29□□□□□ -0.12
CCDC88B-210ENST00000494566 PRSS44E7EML9 344 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 GUK1Q16774 197 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 IGSF11Q5DX21 431 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 C17orf78Q8N4C9 275 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 TM2D1Q9BX74 207 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 OR2H1Q9GZK4 316 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 GPR35Q9HC97 309 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 PHF1O43189 567 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 H2AFB1P0C5Y9 115 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 DUSP1P28562 367 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 MPLP40238 635 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 ALDH3B1P43353 468 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 TAS2R46P59540 309 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 NAAAQ02083 359 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 FOXO1Q12778 655 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 BTNL8Q6UX41 500 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 ZFP62Q8NB50 900 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 CPEB3Q8NE35 698 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 RTN4IP1Q8WWV3 396 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 INTS12Q96CB8 462 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 METTL9Q9H1A3 318 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 CRIM1Q9NZV1 1036 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 GHRLQ9UBU3 117 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 MEMO1Q9Y316 297 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 UMAD1C9J7I0 102 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 NRASP01111 189 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms