RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 FBXL15Q9H469 300 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 POMKQ9H5K3 350 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 RBM22Q9NW64 420 aaKnown RBP eCLIP3.16□□□□□ -1.9
VPS13A-212ENST00000493341 POLR3HQ9Y535 204 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-212ENST00000493341 ROCK1Q13464 1354 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 SLIT1O75093 1534 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 IQGAP1P46940 1657 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 RPRD2Q5VT52 1461 aaKnown RBP3.16□□□□□ -1.9
VPS13A-212ENST00000493341 SYNMO15061 1565 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 ADAMTS13Q76LX8 1427 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 TRBV6-6A0A0A6YYG2 114 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 IGHV1OR15-9A0A0B4J2B8 117 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 CCL15-CCL14A0A0B4J2E2 113 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 IGKV3D-20A0A0C4DH25 116 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 TRIM49D1C9J1S8 452 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 H3BP45 60 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 YIF1AO95070 293 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 CDK1P06493 297 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 NEFHP12036 1026 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 LGALS7P47929 136 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 HBG1P69891 147 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 HBG2P69892 147 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 CCL15Q16663 113 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 SLC25A35Q3KQZ1 300 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 FBXL19-AS1Q494R0 122 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 SAXO2Q658L1 398 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 ENTHD1Q8IYW4 607 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 C2orf73Q8N5S3 287 aaPredicted RBP3.15□□□□□ -1.9
VPS13A-212ENST00000493341 ARIH2OSQ8N7S6 290 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 LINC01555Q8NAE3 123 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 ACBD4Q8NC06 268 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 ENKURQ8TC29 256 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 PPP1R14BQ96C90 147 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 BIRC8Q96P09 236 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 FAAP24Q9BTP7 215 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 NUDT9Q9BW91 350 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 SLC25A31Q9H0C2 315 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 HMG20AQ9NP66 347 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 COMMD9Q9P000 198 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 HMGXB4Q9UGU5 601 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 LRRC42Q9Y546 428 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 KIF15Q9NS87 1388 aa3.15□□□□□ -1.9
VPS13A-212ENST00000493341 LTBP1Q14766 1721 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 UGGT1Q9NYU2 1555 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 MYO5BQ9ULV0 1848 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 IGLV2-8P01709 118 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 HLA-AP01891 365 aaKnown RBP3.15□□□□□ -1.91
VPS13A-212ENST00000493341 APCSP02743 223 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 OR56A5P0C7T3 313 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 ADRB3P13945 408 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 SLC18A1P54219 525 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 SLC36A2Q495M3 483 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 GUSBP11Q6P575 273 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 FAM183BPQ6ZVS7 135 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 SLC16A13Q7RTY0 426 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 OR4K5Q8NGD3 323 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 CPNE4Q96A23 557 aaPredicted RBP3.15□□□□□ -1.91
VPS13A-212ENST00000493341 S100PBPQ96BU1 408 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 RBMXL1Q96E39 390 aaKnown RBP3.15□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF799Q96GE5 643 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF414Q96IQ9 312 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 OR10C1Q96KK4 312 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 RBP7Q96R05 134 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 SUCNR1Q9BXA5 334 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 TPK1Q9H3S4 243 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 RHOFQ9HBH0 211 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 PDFQ9HBH1 243 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 C8orf17Q9NRJ1 99 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 STRCP1A6NGW2 1772 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 ANKRD30AQ9BXX3 1397 aa3.15□□□□□ -1.91
VPS13A-212ENST00000493341 XIRP1Q702N8 1843 aaKnown RBP3.15□□□□□ -1.91
VPS13A-212ENST00000493341 E9PCH4 1651 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 NOS1P29475 1434 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 RRBP1Q9P2E9 1410 aaKnown RBP3.14□□□□□ -1.91
VPS13A-212ENST00000493341 ADGRB3O60242 1522 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 CPS1P31327 1500 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 A0A0U1RQV1 116 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 A0A1B0GXF2 115 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 TMX2-CTNND1H3BSU7 103 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 I3L4J1 428 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 SRSF10O75494 262 aaKnown RBP3.14□□□□□ -1.91
VPS13A-212ENST00000493341 GATBO75879 557 aaKnown RBP3.14□□□□□ -1.91
VPS13A-212ENST00000493341 SPNP16150 400 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 UGT2B7P16662 529 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 HAAOP46952 286 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 PPP1CAP62136 330 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 ESRRGP62508 458 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 DYNLL1P63167 89 aaKnown RBP3.14□□□□□ -1.91
VPS13A-212ENST00000493341 C16orf72Q14CZ0 275 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF239Q16600 458 aaKnown RBP3.14□□□□□ -1.91
VPS13A-212ENST00000493341 TBC1D28Q2M2D7 210 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 PDZD11Q5EBL8 140 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 CYB5R2Q6BCY4 276 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 LAMTOR1Q6IAA8 161 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 RIMKLAQ8IXN7 391 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 TMEM256Q8N2U0 113 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 ELSPBP1Q96BH3 223 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 PLA2G2FQ9BZM2 168 aa3.14□□□□□ -1.91
VPS13A-212ENST00000493341 RPP21Q9H633 154 aaKnown RBP3.14□□□□□ -1.91
VPS13A-212ENST00000493341 INSIG2Q9Y5U4 225 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms