RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 HOXA4Q00056 320 aaPredicted RBP6.67□□□□□ -1.34
USP40-216ENST00000485943 BAMBIQ13145 260 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 DYNC1I2Q13409 638 aaKnown RBP6.67□□□□□ -1.34
USP40-216ENST00000485943 GPR50Q13585 617 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 SLC22A6Q4U2R8 563 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 ACSM3Q53FZ2 586 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 PAN3Q58A45 887 aaKnown RBP6.67□□□□□ -1.34
USP40-216ENST00000485943 ZNF788Q6ZQV5 615 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 CEACAM19Q7Z692 300 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 C11orf53Q8IXP5 236 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 PDZD9Q8IXQ8 264 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 SAXO1Q8IYX7 474 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 OR4M1Q8NGD0 313 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 FCGR1BQ92637 280 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 SNX22Q96L94 193 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 WDFY2Q96P53 400 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 GAFA1Q96PS6 74 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 NRIP2Q9BQI9 281 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 YTHDF1Q9BYJ9 559 aaKnown RBP6.67□□□□□ -1.34
USP40-216ENST00000485943 FAM234AQ9H0X4 552 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 CST11Q9H112 138 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 GAL3ST2Q9H3Q3 398 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 HEXA-AS1Q9H8Q6 139 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 RAB9BQ9NP90 201 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 SIRT7Q9NRC8 400 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 RBFOX1Q9NWB1 397 aaKnown RBP6.67□□□□□ -1.34
USP40-216ENST00000485943 CTSZQ9UBR2 303 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 RPUSD1Q9UJJ7 312 aaKnown RBP6.67□□□□□ -1.34
USP40-216ENST00000485943 MRPS28Q9Y2Q9 187 aaKnown RBP6.67□□□□□ -1.34
USP40-216ENST00000485943 KPTNQ9Y664 436 aa6.67□□□□□ -1.34
USP40-216ENST00000485943 SONP18583 2426 aaKnown RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 A0A0A6YYJ9 748 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 PDCD5O14737 125 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 MGST3O14880 152 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 NOS1APO75052 506 aaPredicted RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 CRTAPO75718 401 aaPredicted RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 OR7C1O76099 320 aaPredicted RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 IGLV1-40P01703 118 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 TK1P04183 234 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 ALDOBP05062 364 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 GTF2F2P13984 249 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 FSTP19883 344 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 CRHBPP24387 322 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 MPZP25189 248 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 PTGFRP43088 359 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 PSMD7P51665 324 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 ERVFRD-1P60508 538 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 MLLT11Q13015 90 aaPredicted RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 DGUOKQ16854 277 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 NKAPLQ5M9Q1 402 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 ATPAF1Q5TC12 328 aaPredicted RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 DMKNQ6E0U4 476 aaPredicted RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 XAF1Q6GPH4 301 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 VMO1Q7Z5L0 202 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 OSR2Q8N2R0 312 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 CHST4Q8NCG5 386 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 OR52N4Q8NGI2 321 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 OR4D6Q8NGJ1 314 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 OR13C5Q8NGS8 318 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 ANGPTL6Q8NI99 470 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 CAPSLQ8WWF8 208 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 SLC25A28Q96A46 364 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 CCDC140Q96MF4 163 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 MGLLQ99685 303 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 DCTN5Q9BTE1 182 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 CDCA4Q9BXL8 241 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 BARHL1Q9BZE3 327 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 CHST6Q9GZX3 395 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 METTL8Q9H825 291 aaKnown RBP6.66□□□□□ -1.34
USP40-216ENST00000485943 NOX4Q9NPH5 578 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 TNFRSF19Q9NS68 423 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 MTCH1Q9NZJ7 389 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 FOXJ3Q9UPW0 622 aa6.66□□□□□ -1.34
USP40-216ENST00000485943 IGKV1D-17A0A075B6S4 117 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 IGKV1-9A0A0C4DH69 117 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 A0A1W2PRD5 423 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 A0A1W2PRF3 423 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 A0A1W2PRM7 423 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 MEIOCA2RUB1 952 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 KIAA1324LA8MWY0 1029 aaPredicted RBP6.65□□□□□ -1.34
USP40-216ENST00000485943 C22orf46C9J442 243 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 M0R1W7 72 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 GABRPO00591 440 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 MRPS14O60783 128 aaKnown RBP6.65□□□□□ -1.34
USP40-216ENST00000485943 CDRT1O95170 752 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 TFF1P04155 84 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 CD1AP06126 327 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 SELLP14151 372 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 GLP1RP43220 463 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 MAP2K4P45985 399 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 OR3A4PP47883 348 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 SLC35A2P78381 396 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 PAX8Q06710 450 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 RBM39Q14498 530 aaKnown RBP6.65□□□□□ -1.34
USP40-216ENST00000485943 TBCEQ15813 527 aaPredicted RBP6.65□□□□□ -1.34
USP40-216ENST00000485943 KRBOX4Q5JUW0 171 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 RNLSQ5VYX0 342 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 GLIPR1L1Q6UWM5 242 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 Q6ZSR3 168 aa6.65□□□□□ -1.34
USP40-216ENST00000485943 LINC00596Q86U02 117 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms