RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 C3orf85A0A1B0GTC6 90 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 FOXS1O43638 330 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 CCL2P13500 99 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 PTGER4P35408 488 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 ISXQ2M1V0 245 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 DMBX1Q8NFW5 382 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 HEYLQ9NQ87 328 aaPredicted RBP11.89□□□□□ -0.51
USP42-206ENST00000479544 RPH3ALQ9UNE2 315 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 HEATR5AQ86XA9 2040 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 CLEC18AA5D8T8 446 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 MAP1LC3B2A6NCE7 125 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 BGLAPP02818 100 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 ZNF708P17019 499 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 GALR1P47211 349 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 MMP16P51512 607 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 ENDOGQ14249 297 aaKnown RBP11.89□□□□□ -0.51
USP42-206ENST00000479544 IZUMO4Q1ZYL8 232 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 DEGS2Q6QHC5 323 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 Q6ZS52 159 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 CLEC18CQ8NCF0 446 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 ELSPBP1Q96BH3 223 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 RNF126Q9BV68 326 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 MAP1LC3BQ9GZQ8 125 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 POMT1Q9Y6A1 747 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 CBY3A6NI87 242 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 CALCRP30988 508 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 ETFRF1Q6IPR1 90 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 ZNF774Q6NX45 483 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 FIP1L1Q6UN15 594 aaKnown RBP11.88□□□□□ -0.51
USP42-206ENST00000479544 RTN4RL2Q86UN3 420 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 OR1K1Q8NGR3 316 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 ST8SIA1Q92185 356 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 ELOVL1Q9BW60 279 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 ERRFI1Q9UJM3 462 aaPredicted RBP11.88□□□□□ -0.51
USP42-206ENST00000479544 CARHSP1Q9Y2V2 147 aaKnown RBP11.88□□□□□ -0.51
USP42-206ENST00000479544 HS3ST3A1Q9Y663 406 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 SIRPB1O00241 398 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 ADCYAP1P18509 176 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 UNC119Q13432 240 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 NOXO1Q8NFA2 376 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 ZNF665Q9H7R5 613 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 TMED3Q9Y3Q3 217 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 GRPP07492 148 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 CXorf66Q5JRM2 361 aaPredicted RBP11.88□□□□□ -0.51
USP42-206ENST00000479544 TGIF2LXQ8IUE1 241 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 PTPMT1Q8WUK0 201 aaPredicted RBP11.88□□□□□ -0.51
USP42-206ENST00000479544 NAT6Q93015 286 aa11.88□□□□□ -0.51
USP42-206ENST00000479544 RAMP1O60894 148 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 CD1AP06126 327 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 CTSDP07339 412 aaPredicted RBP11.87□□□□□ -0.51
USP42-206ENST00000479544 ZNF92Q03936 586 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 MSMO1Q15800 293 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 OR1N1Q8NGS0 311 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 RNF133Q8WVZ7 376 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 ADGRG7Q96K78 797 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 RSG1Q9BU20 258 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 LRRC61Q9BV99 259 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 PAM16Q9Y3D7 125 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 MED13LQ71F56 2210 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 DHRS7CA6NNS2 312 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 CXCL13O43927 109 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 CST2P09228 141 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 SEC11BP0C7V7 166 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 P2RY1P47900 373 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 TMEM241Q24JQ0 296 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 FAM78BQ5VT40 261 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 LIAT1Q6ZQX7 453 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 OR52M1Q8NGK5 317 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 AQP3Q92482 292 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 OXGR1Q96P68 337 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 COA4Q9NYJ1 87 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 WNT16Q9UBV4 365 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 CACNG5Q9UF02 275 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 RND3P61587 244 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 PKIAP61925 76 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 ZNF816Q0VGE8 651 aaPredicted RBP11.87□□□□□ -0.51
USP42-206ENST00000479544 FZD5Q13467 585 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 FHL5Q5TD97 284 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 SYT13Q7L8C5 426 aa11.87□□□□□ -0.51
USP42-206ENST00000479544 SPTY2D1-AS1A0A0U1RR47 76 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 TRGC1P0CF51 173 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 RPS4Y1P22090 263 aaKnown RBP11.86□□□□□ -0.51
USP42-206ENST00000479544 HIST1H3AP68431 136 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 EDDM3AQ14507 147 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 OR8G1Q15617 311 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 PP6455Q8WZ26 134 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 AQP10Q96PS8 301 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 METTL1Q9UBP6 276 aaKnown RBP11.86□□□□□ -0.51
USP42-206ENST00000479544 TRAPPC1Q9Y5R8 145 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 DOCK11Q5JSL3 2073 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 BDP1A6H8Y1 2624 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 AQP7O14520 342 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 DHRS3O75911 302 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 NXPH2O95156 264 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 PTBP3O95758 552 aaKnown RBP11.86□□□□□ -0.51
USP42-206ENST00000479544 PMCHP20382 165 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 FUT3P21217 361 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 SNCAP37840 140 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 GPM6AP51674 278 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 FUT7Q11130 342 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms