RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 COMMD4Q9H0A8 199 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ABCB10Q9NRK6 738 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 HHLA2Q9UM44 414 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OAZ3Q9UMX2 235 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 HILPDAQ9Y5L2 63 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ORC6Q9Y5N6 252 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 LY6LH3BQJ8 138 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 KDM4BO94953 1096 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ALX3O95076 343 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 AMY1AP04745 511 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 AMY2AP04746 511 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CGB3P0DN86 165 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CGB7P0DN87 165 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PRKACBP22694 351 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 AZGP1P25311 298 aaKnown RBP9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CCR9P51686 369 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 MTCP1P56278 107 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 P2RX3P56373 397 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SNRPGP62308 76 aaKnown RBP9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 DYNC1I2Q13409 638 aaKnown RBP9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 EDDM3AQ14507 147 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TCTEX1D4Q5JR98 221 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 Q6P435 159 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 BAIAP2L2Q6UXY1 529 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ZBTB49Q6ZSB9 765 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 LHFPL2Q6ZUX7 228 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 C16orf82Q7Z2V1 217 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR4F17Q8NGA8 305 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR10AC1Q8NH08 325 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 STMN2Q93045 179 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 FGGYQ96C11 551 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR4F4Q96R69 305 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ZNF649Q9BS31 505 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 RHOFQ9HBH0 211 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TAS2R3Q9NYW6 316 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 DPM3Q9P2X0 92 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 GNG8Q9UK08 70 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ZNF281Q9Y2X9 895 aa9.8□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 A0A087X0M5 115 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 A0A1B0GX30 115 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR4C45A6NMZ5 311 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SLC16A6O15403 523 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR2H2O95918 312 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ALPLP05186 524 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CSN2P05814 226 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PRKACAP17612 351 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 GABRR1P24046 479 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 HTR1DP28221 377 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 GDNFP39905 211 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SLC34A1Q06495 639 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TMEM95Q3KNT9 176 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 RTN4RL2Q86UN3 420 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SAXO1Q8IYX7 474 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ABHD12Q8N2K0 398 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR51A4Q8NGJ6 313 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SPSB1Q96BD6 273 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 R3HDM4Q96D70 268 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PELI1Q96FA3 418 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OPALINQ96PE5 141 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 LIN7BQ9HAP6 207 aa9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 EXOGQ9Y2C4 368 aaKnown RBP9.79□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 H3BNX3 289 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 F2RL2O00254 374 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SH2D1BO14796 132 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CALCBP10092 127 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 GABRB1P18505 474 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ATP6V1E1P36543 226 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 VDAC2P45880 294 aaPredicted RBP9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 GLIPR1P48060 266 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 POU3F4P49335 361 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 GABPB1Q06547 395 aaPredicted RBP9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CDK5R1Q15078 307 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 UTF1Q5T230 341 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR52W1Q6IF63 320 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 FAM220AQ7Z4H9 259 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR5AU1Q8NGC0 362 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PHF21AQ96BD5 680 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 COQ2Q96H96 371 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR5M11Q96RB7 305 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 C9orf16Q9BUW7 83 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 RIBC2Q9H4K1 309 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 LINC00574Q9H8X3 128 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 S100A14Q9HCY8 104 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 NECAP2Q9NVZ3 263 aa9.78□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 FAM90A18PA6NE21 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A16PA6NEW6 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A20PA6NIJ5 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 SAC3D1A6NKF1 404 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A9PA6NNJ1 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A12PA8MX19 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A5PA8MXJ8 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 SIRPB1O00241 398 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 SLC33A1O00400 549 aaPredicted RBP9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 CYB5AP00167 134 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 ALDOBP05062 364 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A15PP0C7V4 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A13PP0C7W8 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A14PP0C7W9 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 FAM90A24PP0C7X0 464 aa9.77□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 CDK2P24941 298 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms