RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MRPL21Q7Z2W9 205 aaKnown RBP7.69□□□□□ -1.18
SYNE1-217ENST00000466159 NUFIP2Q7Z417 695 aaKnown RBP7.69□□□□□ -1.18
SYNE1-217ENST00000466159 FAM71E2Q8N5Q1 922 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 OR5T2Q8NGG2 359 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 GLYATL2Q8WU03 294 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 APH1AQ96BI3 265 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 GALNT14Q96FL9 552 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 PRRX2Q99811 253 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 SMIM3Q9BZL3 60 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 TMEM231Q9H6L2 316 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 TAF9BQ9HBM6 251 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 PCDHB16Q9NRJ7 776 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 IL36RNQ9UBH0 155 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 STARD10Q9Y365 291 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 ARHGAP21Q5T5U3 1957 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 FAM74A7A6NL05 159 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 M0R296 226 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 FBXO24O75426 580 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 DIRAS3O95661 229 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 MBPP02686 304 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-217ENST00000466159 IL32P24001 234 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 TMEM33P57088 247 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 FAM74A3Q4VXF1 159 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 PLA2G2CQ5R387 149 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 TMEM211Q6ICI0 200 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 OR4A4PQ8NGN8 299 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 EXTL1Q92935 676 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 ARL11Q969Q4 196 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 MOB3AQ96BX8 217 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 HRH4Q9H3N8 390 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 LPAR3Q9UBY5 353 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 ATPIF1Q9UII2 106 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 AMDHD2Q9Y303 409 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 LIPGQ9Y5X9 500 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 PCNX2A6NKB5 2137 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF732B4DXR9 585 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 GPR31O00270 319 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 HSPB6O14558 160 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 TAAR5O14804 337 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ATG12O94817 140 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 TNFSF15O95150 251 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 SP1P08047 785 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 DUSP1P28562 367 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 MEOX1P50221 254 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 SMCO1Q147U7 214 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 GUCA2BQ16661 112 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ATP1A1-AS1Q5TC04 95 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 APOBEC3DQ96AK3 386 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 MSI2Q96DH6 328 aaKnown RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 BSCL2Q96G97 398 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 NKX6-2Q9C056 277 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF552Q9H707 407 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 C12orf49Q9H741 205 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 MTCH1Q9NZJ7 389 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 PLA2G2EQ9NZK7 142 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 FBXL17Q9UF56 701 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 PRSS50Q9UI38 385 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 FBXO9Q9UK97 447 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ESPL1Q14674 2120 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF724A8MTY0 619 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 C3orf80F5H4A9 247 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 PHF1O43189 567 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 LILRA1O75019 489 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 PPYP01298 95 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 NME2P22392 152 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 GLP1RP43220 463 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 HERV-K104P61576 105 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 CEACAM21Q3KPI0 293 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 LIAT1Q6ZQX7 453 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ZDHHC23Q8IYP9 409 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ASPMQ8IZT6 3477 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 Q8NFD4 153 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 OR52M1Q8NGK5 317 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ERGIC1Q969X5 290 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 C18orf12Q96KH6 178 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 POM121L2Q96KW2 1035 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 TP53RKQ96S44 253 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 TSNAXQ99598 290 aaKnown RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 ADAT1Q9BUB4 502 aaKnown RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 SUCNR1Q9BXA5 334 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 OR51B6Q9H340 312 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 MMP26Q9NRE1 261 aa7.68□□□□□ -1.18
SYNE1-217ENST00000466159 TNRC6AQ8NDV7 1962 aaKnown RBP7.68□□□□□ -1.18
SYNE1-217ENST00000466159 PRRC2CQ9Y520 2896 aaKnown RBP7.67□□□□□ -1.18
SYNE1-217ENST00000466159 ATP6V1G2-DDX39BF2Z307 99 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 SYNGR1O43759 233 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 CST4P01036 141 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 LPAR6P43657 344 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 UCP3P55916 312 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 HIKESHIQ53FT3 197 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-217ENST00000466159 PUSL1Q8N0Z8 303 aaKnown RBP7.67□□□□□ -1.18
SYNE1-217ENST00000466159 SMIM8Q96KF7 97 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 SYT3Q9BQG1 590 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 RSRP1Q9BUV0 290 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 DEFB127Q9H1M4 99 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 FAM96BQ9Y3D0 163 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 R4GN57 208 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 H7C1Q1 480 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 NME2P1O60361 137 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms