RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ODF3L1Q8IXM7 274 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 LGI3Q8N145 548 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 NDUFAF3Q9BU61 184 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 CHST11Q9NPF2 352 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 B3GAT1Q9P2W7 334 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 C2orf16Q68DN1 1984 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 CHD3Q12873 2000 aaKnown RBP10.18□□□□□ -0.78
CPSF3-202ENST00000460593 SERPINE3A8MV23 424 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 FGF7P21781 194 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 IZUMO4Q1ZYL8 232 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 PIGYQ3MUY2 71 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 PARM1Q6UWI2 310 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 OR2AE1Q8NHA4 323 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 IGFLR1Q9H665 355 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 SIRT7Q9NRC8 400 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 PIGLQ9Y2B2 252 aa10.18□□□□□ -0.78
CPSF3-202ENST00000460593 COL4A2P08572 1712 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 MKRN2OSH3BPM6 223 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 NTSR1P30989 418 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 FAM90A2PQ658T7 463 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 TMEM252Q8N6L7 170 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 SSC4DQ8WTU2 575 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 TMEM131Q92545 1883 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 RSG1Q9BU20 258 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 PNRC2Q9NPJ4 139 aaKnown RBP10.17□□□□□ -0.78
CPSF3-202ENST00000460593 ZNF407Q9C0G0 2248 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 ADAMTS9Q9P2N4 1935 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 A0A1B0GUS0 222 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 XKRY2A2RUG3 117 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 ZFP36L1Q07352 338 aaKnown RBP10.17□□□□□ -0.78
CPSF3-202ENST00000460593 CLN3Q13286 438 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 IL13RA2Q14627 380 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 RTP5Q14D33 572 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 SSX7Q7RTT5 188 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 THNSL2Q86YJ6 484 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 OR4D5Q8NGN0 318 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 TMEM37Q8WXS4 190 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 ELOVL1Q9BW60 279 aa10.17□□□□□ -0.78
CPSF3-202ENST00000460593 A0A1B0GW64 132 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 A0A1B0GWJ7 208 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 HMGB3O15347 200 aaKnown RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 ZNHIT1O43257 154 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 OR2J2O76002 312 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 CNOT4O95628 575 aaKnown RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 TNFP01375 233 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 CD33P20138 364 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 ZNF506Q5JVG8 444 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 Q6ZPA2 131 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 OR5R1Q8NH85 324 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 ZNF296Q8WUU4 475 aaPredicted RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 HIST1H2AAQ96QV6 131 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 LRFN1Q9P244 771 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 IL17BQ9UHF5 180 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 LAMP3Q9UQV4 416 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 SDK2Q58EX2 2172 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 DIDO1Q9BTC0 2240 aaKnown RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 H3BMH7 237 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 ADAM20O43506 726 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 PAX1P15863 534 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 AADACP22760 399 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 NKX2-1P43699 371 aaPredicted RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 RNF4P78317 190 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 TEX38Q6PEX7 206 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 DOK3Q7L591 496 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 NKX2-4Q9H2Z4 354 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 CLDN34H7C241 214 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 HSPB1P04792 205 aaKnown RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 CCL5P13501 91 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 GZMHP20718 246 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 MRPS34P82930 218 aaKnown RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 TMEM267Q0VDI3 215 aaPredicted RBP10.16□□□□□ -0.78
CPSF3-202ENST00000460593 FOXO1Q12778 655 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 MYBPHQ13203 477 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 SPIN3Q5JUX0 258 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 TMEM183AQ8IXX5 376 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 D2HGDHQ8N465 521 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 MRGPRX1Q96LB2 322 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 NECAP2Q9NVZ3 263 aa10.16□□□□□ -0.78
CPSF3-202ENST00000460593 FRYLO94915 3013 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 SPINK2P20155 84 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 MTCP1P56278 107 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 PMS2P11Q13670 270 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 ZNF266Q14584 549 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 SLC10A1Q14973 349 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 ADIRFQ15847 76 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 TCEAL6Q6IPX3 200 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 SLC35E3Q7Z769 313 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 OR5T1Q8NG75 326 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 OR1P1Q8NH06 330 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 ZNF160Q9HCG1 818 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 KLHL13Q9P2N7 655 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 PITPNC1Q9UKF7 332 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 MMACHCQ9Y4U1 282 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 A0A1B0GU03 582 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 VAMP2P63027 116 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 NCR3LG1Q68D85 454 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 ZNF66Q6ZN08 573 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 UEVLDQ8IX04 471 aa10.15□□□□□ -0.78
CPSF3-202ENST00000460593 MRPL13Q9BYD1 178 aaKnown RBP10.15□□□□□ -0.78
CPSF3-202ENST00000460593 RALGAPA1Q6GYQ0 2036 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms