RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 STRAPQ9Y3F4 350 aaKnown RBP10.34□□□□□ -0.75
MSH6-204ENST00000445503 RFNGQ9Y644 331 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 DNAJC13O75165 2243 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 TRAV39A0A0B4J263 110 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 PDCD6O75340 191 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 SYNGR4O95473 234 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 S100A8P05109 93 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 SRSF4Q08170 494 aaKnown RBP10.33□□□□□ -0.76
MSH6-204ENST00000445503 OR10AD1Q8NGE0 317 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 IFI44Q8TCB0 444 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 SMIM8Q96KF7 97 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 GVINP1Q7Z2Y8 2422 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 S100PP25815 95 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 CFPP27918 469 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 EWSR1Q01844 656 aaKnown RBP eCLIP10.33□□□□□ -0.765e-7■■■■□ 21.4
MSH6-204ENST00000445503 ENDOGQ14249 297 aaKnown RBP10.33□□□□□ -0.76
MSH6-204ENST00000445503 RAB35Q15286 201 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 MST1LQ2TV78 715 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 OR56B2PQ8NGI1 322 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 A0A1W2PQM1 296 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 MEX3AA1L020 520 aaKnown RBP10.33□□□□□ -0.76
MSH6-204ENST00000445503 FKBP2P26885 142 aaKnown RBP10.33□□□□□ -0.76
MSH6-204ENST00000445503 ALDH3B1P43353 468 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 RAB5CP51148 216 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 FUT6P51993 359 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 CLDN15P56746 228 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 C5orf24Q7Z6I8 188 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 SNIP1Q8TAD8 396 aaKnown RBP10.33□□□□□ -0.76
MSH6-204ENST00000445503 NAT6Q93015 286 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 SPSB2Q99619 263 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 PPP1R3CQ9UQK1 317 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 TRBV23-1A0A0A0MS06 115 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 FAM166BA8MTA8 275 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 CBR3O75828 277 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 YIF1AO95070 293 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 PPYP01298 95 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 FBP1P09467 338 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 ATP6V0CP27449 155 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 FAM3AP98173 230 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 CXorf66Q5JRM2 361 aaPredicted RBP10.33□□□□□ -0.76
MSH6-204ENST00000445503 TBC1D26Q86UD7 250 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 IL22RA1Q8N6P7 574 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 SLC7A10Q9NS82 523 aa10.33□□□□□ -0.76
MSH6-204ENST00000445503 GPR179Q6PRD1 2367 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 THADAQ6YHU6 1953 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 TRBV6-7A0A0A0MS04 114 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 NPIPB13A6NJU9 1138 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 NPIPB4C9JG80 1138 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 CYB5BO43169 146 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 IGLV3-19P01714 112 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 MPZP25189 248 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 P2RY1P47900 373 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 RPS16P62249 146 aaKnown RBP10.32□□□□□ -0.76
MSH6-204ENST00000445503 ZNF92Q03936 586 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 TMEM267Q0VDI3 215 aaPredicted RBP10.32□□□□□ -0.76
MSH6-204ENST00000445503 TESK1Q15569 626 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 HLA-BQ31612 363 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 OR2B11Q5JQS5 317 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 LFNGQ8NES3 379 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 CPT1CQ8TCG5 803 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 Q96M66 194 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 TMEM100Q9NV29 134 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 PI4KAP42356 2102 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 A0A0U1RQV5 110 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 ZNF816-ZNF321PA0A0X1KG74 233 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 ZNF732B4DXR9 585 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 MPPED1O15442 326 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 ZNF17P17021 662 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 EXT1Q16394 746 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 OR8G2PQ6IF36 304 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 CARFQ8N187 725 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 ABHD3Q8WU67 409 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 PLK3Q9H4B4 646 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 TMED3Q9Y3Q3 217 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 DIDO1Q9BTC0 2240 aaKnown RBP10.32□□□□□ -0.76
MSH6-204ENST00000445503 EML5Q05BV3 1969 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 HMGB3O15347 200 aaKnown RBP10.32□□□□□ -0.76
MSH6-204ENST00000445503 DYNLT3P51808 116 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 SRPXP78539 464 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 TLE4Q04727 773 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 ZNF154Q13106 437 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 ZNF239Q16600 458 aaKnown RBP10.32□□□□□ -0.76
MSH6-204ENST00000445503 HIST2H3PS2Q5TEC6 136 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 ZNF429Q86V71 674 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 GAPTQ8N292 157 aa10.32□□□□□ -0.76
MSH6-204ENST00000445503 WDR1O75083 606 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 TUSC2O75896 110 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 GAPDHP04406 335 aaKnown RBP10.31□□□□□ -0.76
MSH6-204ENST00000445503 SEC11BP0C7V7 166 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 SNCAP37840 140 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 NPBWR2P48146 333 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 RAC1P63000 192 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 IZUMO4Q1ZYL8 232 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 SPATA46Q5T0L3 261 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 BTNL8Q6UX41 500 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 LINC00696Q6ZRV3 163 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 ADPRHL1Q8NDY3 354 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 OR10D3Q8NH80 312 aa10.31□□□□□ -0.76
MSH6-204ENST00000445503 C1orf147Q96MC9 270 aaPredicted RBP10.31□□□□□ -0.76
MSH6-204ENST00000445503 NUDT16L1Q9BRJ7 211 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms