RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PLAGL1Q9UM63 463 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 RCL1Q9Y2P8 373 aaKnown RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 C17orf51A8MQB3 221 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 CLDN18P56856 261 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 ZNF117Q03924 483 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 ACKR1Q16570 336 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 SCD5Q86SK9 330 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 GATSQ8NAP1 163 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 NRIP2Q9BQI9 281 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 A0A0B4J2E0 115 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 A0A1B0GX12 115 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 SIGLEC5O15389 551 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 HOXC4P09017 264 aaPredicted RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 MBNL1Q9NR56 388 aaKnown RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 TMEM242Q9NWH2 141 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 MELTFP08582 738 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 RPL18Q07020 188 aaKnown RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 DCAF12Q5T6F0 453 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 FBLIM1Q8WUP2 373 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 OR2W1Q9Y3N9 320 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 FAM221AA4D161 298 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 CDK2AP1O14519 115 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 C4orf45Q96LM5 186 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 MS4A18H0YCH9 400 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 ACP1P24666 158 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 PRDX4Q13162 271 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 MS4A18Q3C1V0 323 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 MUC15Q8N387 334 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 STPG3Q8N7X2 389 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 BEND2Q8NDZ0 799 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 CGGBP1Q9UFW8 167 aaPredicted RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 LILRA5A6NI73 299 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 SNRPNP63162 240 aaKnown RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 IFITM10A6NMD0 228 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 H3BQ15 152 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 FRS3O43559 492 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 TTRP02766 147 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 NMBP08949 121 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 NR0B2Q15466 257 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 C21orf62-AS1Q17RA5 79 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 NIT1Q86X76 327 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 OR1P1Q8NH06 330 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 KLF13Q9Y2Y9 288 aaPredicted RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 ALG1L2C9J202 215 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 BMPR1BO00238 502 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 CLEC2LP0C7M8 214 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 KIR2DL1P43626 348 aaPredicted RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 KIR2DL2P43627 348 aaPredicted RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 KLF3P57682 345 aaPredicted RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 HES3Q5TGS1 186 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 GDF6Q6KF10 455 aaPredicted RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 TMEM207Q6UWW9 146 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 OR2V1Q8NHB1 315 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 B9D1Q9UPM9 204 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 SIGLEC7Q9Y286 467 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 DDX60LQ5H9U9 1706 aaKnown RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 C7orf71A4D174 169 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 J3QW42 95 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 ARG2P78540 354 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 PPP1R1AQ13522 171 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 PRR18Q8N4B5 295 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 TPSD1Q9BZJ3 242 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 C3orf85A0A1B0GTC6 90 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 A6NCN8 305 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 CD38P28907 300 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 OR1N1Q8NGS0 311 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 RNF39Q9H2S5 420 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 KCNE5Q9UJ90 142 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 QDPRP09417 244 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 POLR2IP36954 125 aaKnown RBP6.42□□□□□ -1.38
VPS53-204ENST00000437048 LIM2P55344 173 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 SEC11AP67812 179 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 LSM11P83369 360 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS53-204ENST00000437048 IRF3Q14653 427 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 NOXO1Q8NFA2 376 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 SARAFQ96BY9 339 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 NAV3Q8IVL0 2385 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 IRS1P35568 1242 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 TMPRSS3P57727 454 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 AESQ08117 197 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 DEFB118Q96PH6 123 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 V9GYH0 126 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 FITM1A5D6W6 292 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 CD8AP01732 235 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 TEPPQ6URK8 271 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 TMEM136Q6ZRR5 245 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 TMEM45BQ96B21 275 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 IL17FQ96PD4 163 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 MGST2Q99735 147 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 CLEC5AQ9NY25 188 aa6.42□□□□□ -1.38
VPS53-204ENST00000437048 DGAT2L7PQ6IED9 249 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 CISD1Q9NZ45 108 aaKnown RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 TUSC1Q2TAM9 212 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 ZBP1Q9H171 429 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 TRBV11-1A0A0K0K1C0 115 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 ZNF865P0CJ78 1059 aaPredicted RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 GZMHP20718 246 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 KLF9Q13886 244 aaPredicted RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 PMVKQ15126 192 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms