RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 PDGFBP01127 241 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-207ENST00000433762 PPYP01298 95 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 SERPINA7P05543 415 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 CTXN2P0C2S0 81 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 CCL4P13236 92 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 GFRA1P56159 465 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 GNMTQ14749 295 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 MPV17LQ2QL34 196 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 PIGYQ3MUY2 71 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 LYZL2Q7Z4W2 148 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 LINC00596Q86U02 117 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 YRDCQ86U90 279 aaKnown RBP11.8□□□□□ -0.52
COL6A3-207ENST00000433762 CLEC18CQ8NCF0 446 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 ALKBH3Q96Q83 286 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-207ENST00000433762 ZPBPQ9BS86 351 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 ADAT1Q9BUB4 502 aaKnown RBP11.8□□□□□ -0.52
COL6A3-207ENST00000433762 PBDC1Q9BVG4 233 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 SCRT1Q9BWW7 348 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 TMEM222Q9H0R3 208 aa11.8□□□□□ -0.52
COL6A3-207ENST00000433762 G3V3Y1 287 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 PRKACAP17612 351 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 KCNJ3P48549 501 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 ZNF266Q14584 549 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 SSPNQ14714 243 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 IL22RA2Q969J5 263 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 HIPK2Q9H2X6 1198 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 SAV1Q9H4B6 383 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-207ENST00000433762 MEX3AA1L020 520 aaKnown RBP11.79□□□□□ -0.52
COL6A3-207ENST00000433762 COLCA2A8K830 154 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 TRDCB7Z8K6 153 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 UMAD1C9J7I0 102 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 MPPED1O15442 326 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 DIRAS3O95661 229 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 SCGB1D2O95969 90 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 WNT2P09544 360 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 OR8U9P0C7N5 309 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 EDN3P14138 238 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.79□□□□□ -0.52
COL6A3-207ENST00000433762 ZNF611Q8N823 705 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 OR8U1Q8NH10 309 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 HPSE2Q8WWQ2 592 aa11.79□□□□□ -0.52
COL6A3-207ENST00000433762 RIMS4Q9H426 269 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-207ENST00000433762 BOKQ9UMX3 212 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-207ENST00000433762 C3orf85A0A1B0GTC6 90 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 BTBD17A6NE02 478 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 NAPSAO96009 420 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 CFIP05156 583 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 AADACP22760 399 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 FXYD4P59646 89 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 FGF12P61328 243 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 S100A12P80511 92 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 DPPA2Q7Z7J5 298 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 RXFP4Q8TDU9 374 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 BOD1Q96IK1 185 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 TAAR9Q96RI9 348 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 REPIN1Q9BWE0 567 aaKnown RBP11.78□□□□□ -0.52
COL6A3-207ENST00000433762 ZNF442Q9H7R0 627 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 TCFL5Q9UL49 500 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 TRBV6-6A0A0A6YYG2 114 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 A0A0G2JMM0 328 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 KIR2DS1A0A191URI9 304 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 A0A1W2PPB8 328 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 A0A1W2PRS3 328 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 KIR3DP1A8MWS1 328 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 MASP2O00187 686 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 GDF9O60383 454 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 PITX3O75364 302 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 CRYBA1P05813 215 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 KIR2DS4P43632 304 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 RAB5BP61020 215 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 KIR2DS1Q14954 304 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 DAZAP2Q15038 168 aaPredicted RBP11.78□□□□□ -0.52
COL6A3-207ENST00000433762 GUK1Q16774 197 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 MIDNQ504T8 468 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 ACER2Q5QJU3 275 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 SHEQ5VZ18 495 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 PIGCQ92535 297 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 SLC25A31Q9H0C2 315 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 PLK3Q9H4B4 646 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 C19orf12Q9NSK7 152 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 ZDHHC8Q9ULC8 765 aa11.78□□□□□ -0.52
COL6A3-207ENST00000433762 PHF1O43189 567 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-207ENST00000433762 SS18L1O75177 396 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-207ENST00000433762 TUSC2O75896 110 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 HOXB1P14653 301 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-207ENST00000433762 CAMLGP49069 296 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 CYB561P49447 251 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 RHEBQ15382 184 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 SP6Q3SY56 376 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 PHLDA2Q53GA4 152 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 DCAF12Q5T6F0 453 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 OR5L1Q8NGL2 311 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 SPACA1Q9HBV2 294 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 WFDC1Q9HC57 220 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 Q9N2K0 584 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 FSCN3Q9NQT6 498 aa11.77□□□□□ -0.52
COL6A3-207ENST00000433762 RCL1Q9Y2P8 373 aaKnown RBP11.77□□□□□ -0.52
COL6A3-207ENST00000433762 SDK1Q7Z5N4 2213 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 KMT2EQ8IZD2 1858 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF98A6NK75 572 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms