RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 PISDQ9UG56 409 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 HSF4Q9ULV5 492 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 C14orf166Q9Y224 244 aaKnown RBP6.19□□□□□ -1.42
COL28A1-202ENST00000430711 STARD10Q9Y365 291 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DNAJC13O75165 2243 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 AHCTF1Q8WYP5 2266 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 MED12LQ86YW9 2145 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 IGHV1-45A0A0A0MS14 117 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 TRAV39A0A0B4J263 110 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 A0A0G2JRQ6 117 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 A0A0U1RQV5 110 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 A0A1B0GW55 424 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF724A8MTY0 619 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 LCATP04180 440 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 CTSDP07339 412 aaPredicted RBP6.19□□□□□ -1.42
COL28A1-202ENST00000430711 OR8U8P0C7N1 319 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 JMJD7P0C870 316 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DUX4L2P0CJ85 424 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DUX4L3P0CJ86 424 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DUX4L4P0CJ87 422 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DUX4L5P0CJ88 424 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DUX4L6P0CJ89 424 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DUX4L7P0CJ90 424 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 PSG4Q00888 419 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 HERPUD1Q15011 391 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 ACTBL2Q562R1 376 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 KIAA2026Q5HYC2 2103 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 KRBOX4Q5JUW0 171 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 NCMAPQ5T1S8 102 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 FAM53AQ6NSI3 398 aaPredicted RBP6.19□□□□□ -1.42
COL28A1-202ENST00000430711 FOXL2NBQ6ZUU3 175 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 GGNQ86UU5 652 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF295-AS1Q8N0V1 137 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 SPAG16Q8N0X2 631 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 CPEB3Q8NE35 698 aaKnown RBP6.19□□□□□ -1.42
COL28A1-202ENST00000430711 ABHD3Q8WU67 409 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 EDARADDQ8WWZ3 215 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DNASE2BQ8WZ79 361 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 SLAMF9Q96A28 289 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 SAT2Q96F10 170 aaPredicted RBP6.19□□□□□ -1.42
COL28A1-202ENST00000430711 C18orf12Q96KH6 178 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 PAPOLGQ9BWT3 736 aaKnown RBP6.19□□□□□ -1.42
COL28A1-202ENST00000430711 SMOC1Q9H4F8 434 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 C11orf1Q9H5F2 150 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 NAA60Q9H7X0 242 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DECR2Q9NUI1 292 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 C1orf123Q9NWV4 160 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DNAJB11Q9UBS4 358 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DUX4Q9UBX2 424 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 RARRES3Q9UL19 164 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 DMXL2Q8TDJ6 3036 aa6.19□□□□□ -1.42
COL28A1-202ENST00000430711 IGKV1-6A0A0C4DH72 117 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 C5orf52A6NGY3 159 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 ARGFXA6NJG6 315 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 SERPINE3A8MV23 424 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 NPIPA2E9PIF3 369 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 NPIPA3F8WFD2 350 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 PHF1O43189 567 aaPredicted RBP6.18□□□□□ -1.42
COL28A1-202ENST00000430711 PDGFBP01127 241 aaPredicted RBP6.18□□□□□ -1.42
COL28A1-202ENST00000430711 HEXAP06865 529 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF728P0DKX0 622 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 NQO2P16083 231 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 COL8A2P25067 703 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 DVL1P1P54792 670 aaPredicted RBP6.18□□□□□ -1.42
COL28A1-202ENST00000430711 LSM6P62312 80 aaKnown RBP6.18□□□□□ -1.42
COL28A1-202ENST00000430711 RSU1Q15404 277 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 TSC22D1Q15714 1073 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 GUK1Q16774 197 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 C20orf204Q6ZNR8 217 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 SGPP2Q8IWX5 399 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 SKA3Q8IX90 412 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 GJC3Q8NFK1 279 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 LILRB1Q8NHL6 650 aaPredicted RBP6.18□□□□□ -1.42
COL28A1-202ENST00000430711 SLC22A8Q8TCC7 542 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 IMMP1LQ96LU5 166 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 WNT5BQ9H1J7 359 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 ARV1Q9H2C2 271 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 RNF122Q9H9V4 155 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 PARP11Q9NR21 331 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 PTRH2Q9Y3E5 179 aaKnown RBP6.18□□□□□ -1.42
COL28A1-202ENST00000430711 KALRNO60229 2985 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 MED13Q9UHV7 2174 aa6.18□□□□□ -1.42
COL28A1-202ENST00000430711 KRTAP4-8A0A0G2JLE6 195 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 IGHV3-64DA0A0J9YX35 117 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF716A6NP11 495 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 H3BP45 60 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SGCEO43556 437 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 CXCL13O43927 109 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SCGNO76038 276 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 CST7O76096 145 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 CELA3AP09093 270 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SCTP09683 121 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 DANCRP0C864 163 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ITGA3P26006 1051 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 EPHA8P29322 1005 aaPredicted RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SLC35A1P78382 337 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 FAM3AP98173 230 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 FABP9Q0Z7S8 132 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 WIPI1Q5MNZ9 446 aaPredicted RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SPSB3Q6PJ21 355 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms