RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 OR13G1Q8NGZ3 307 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF420Q8TAQ5 688 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 ACTRT1Q8TDG2 376 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SRSF12Q8WXF0 261 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 RPUSD4Q96CM3 377 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 IMP4Q96G21 291 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 MRPL48Q96GC5 212 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SNF8Q96H20 258 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 CEP170P1Q96L14 293 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SUCNR1Q9BXA5 334 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SLC25A39Q9BZJ4 359 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SPNS1Q9H2V7 528 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 MS4A6AQ9H2W1 248 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF331Q9NQX6 463 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 DMAC2Q9NW81 257 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF226Q9NYT6 803 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 NUFIP1Q9UHK0 495 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SIGLEC7Q9Y286 467 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 LSM5Q9Y4Y9 91 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 ARL5AQ9Y689 179 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 PALLDQ8WX93 1383 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 RIMS2Q9UQ26 1411 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 TRAV19A0A0A6YYK7 116 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 NPIPB7O75200 414 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 TNFSF13O75888 250 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 IGKV1D-16P01601 117 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 HLA-DPB1P04440 258 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 CTSLP07711 333 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 OR4E1P0C645 316 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 UCHL3P15374 230 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF30P17039 623 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF32P17041 273 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 TAC1P20366 129 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 G0S2P27469 103 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 RPL12P30050 165 aaKnown RBP3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 PPOXP50336 477 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 TCL1AP56279 114 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ARPC4P59998 168 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ADIGQ0VDE8 80 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 PMVKQ15126 192 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 SHHQ15465 462 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 HIST3H3Q16695 136 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 C4orf26Q17RF5 130 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 FBXW9Q5XUX1 488 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 FBXW12Q6X9E4 464 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 MDP1Q86V88 176 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 NIT1Q86X76 327 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF433Q8N7K0 673 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 GATD1Q8NB37 220 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 SLC26A10Q8NG04 563 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 HAVCR2Q8TDQ0 301 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 DTD1Q8TEA8 209 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 CASTOR1Q8WTX7 329 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ASB13Q8WXK3 278 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 SMIM8Q96KF7 97 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ULBP1Q9BZM6 244 aa3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF608Q9ULD9 1512 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 F11RQ9Y624 299 aaKnown RBP3.57□□□□□ -1.84
CCDC88A-206ENST00000430086 CAMTA1Q9Y6Y1 1673 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 SNAPC4Q5SXM2 1469 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 NRCAMQ92823 1304 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 A0A0U1RQV1 116 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 TRBV12-3P01733 135 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 SPNP16150 400 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 CD70P32970 193 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 CBX5P45973 191 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 LGALS7P47929 136 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 RAB25P57735 213 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 SMAGPQ0VAQ4 97 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 MAPK14Q16539 360 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 HES5Q5TA89 166 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 TMEM236Q5W0B7 351 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 TIFABQ6ZNK6 161 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 DGAT2L6Q6ZPD8 337 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 RASSF6Q6ZTQ3 369 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 CAMK2N1Q7Z7J9 78 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 SLC51BQ86UW2 128 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 DCAKDQ8WVC6 231 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 TIPINQ9BVW5 301 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 SLC25A31Q9H0C2 315 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 MMACHCQ9Y4U1 282 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 ENPP4Q9Y6X5 453 aa3.56□□□□□ -1.84
CCDC88A-206ENST00000430086 ANKRD30AQ9BXX3 1397 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 ZNF532Q9HCE3 1301 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 OR5K4A6NMS3 321 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 H0YJX3 145 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 KPNA3O00505 521 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 TRAF3IP2O43734 574 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 GABARAPO95166 117 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 CD74P04233 296 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 IGKV5-2P06315 115 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 NUDT1P36639 197 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 PPP1R1AQ13522 171 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 PTGES3Q15185 160 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 RBMY1FQ15415 496 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 LRRC26Q2I0M4 334 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 C6orf99Q4VX62 202 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 TMEM255AQ5JRV8 349 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 FAM162BQ5T6X4 162 aa3.55□□□□□ -1.84
CCDC88A-206ENST00000430086 HACD4Q5VWC8 232 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms