RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SYNGR3O43761 229 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 MTRF1O75570 445 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 B3GALNT1O75752 331 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 C1QL1O75973 258 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 APOC1P02654 83 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 GSTP1P09211 210 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 ADCYAP1P18509 176 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 FCGR2CP31995 323 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 TSPAN7P41732 249 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 NPBWR1P48145 328 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 CLN3Q13286 438 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 TFAP2EQ6VUC0 442 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 RPRMLQ8N4K4 120 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 MRPL24Q96A35 216 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 TNRC6AQ8NDV7 1962 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 WNK2Q9Y3S1 2297 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 ZNF732B4DXR9 585 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 HSD17B6O14756 317 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 DNPH1O43598 174 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 GP1BAP07359 652 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 OR5H8P0DN80 308 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 EPHA1P21709 976 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 ZBTB25P24278 435 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 SUPT4H1P63272 117 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 FGL1Q08830 312 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 ECH1Q13011 328 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 H3F3CQ6NXT2 135 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 FAHD2BQ6P2I3 314 aaPredicted RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 ZNF585AQ6P3V2 769 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 Q6ZPA2 131 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 LYZL2Q7Z4W2 148 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 LYG2Q86SG7 212 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 SLC25A42Q86VD7 318 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 LDLRAD3Q86YD5 345 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 ZSCAN4Q8NAM6 433 aaPredicted RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 ISOC2Q96AB3 205 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 FAHD2AQ96GK7 314 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 TRIB1Q96RU8 372 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 PHB2Q99623 299 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 CDC6Q99741 560 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 FGF23Q9GZV9 251 aaPredicted RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 GHRLQ9UBU3 117 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 ZFYVE26Q68DK2 2539 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 PTPRQQ9UMZ3 2332 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 A0A0U1RQV5 110 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 IGLV3-1P01715 115 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 SCTP09683 121 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 PRF1P14222 555 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 ACP1P24666 158 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 AGTR1P30556 359 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 THBS4P35443 961 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 FHITP49789 147 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 RBP2P50120 134 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 LHX2P50458 406 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 FABP6P51161 128 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 RPS27AP62979 156 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 HIST1H3AP68431 136 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 AIMP2Q13155 320 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 HIST2H3PS2Q5TEC6 136 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 FAM27BQ5VT28 67 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 AADACL3Q5VUY0 350 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 HIST2H3AQ71DI3 136 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 CCDC54Q8NEL0 328 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 RTBDNQ9BSG5 229 aaPredicted RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 SF3B5Q9BWJ5 86 aaKnown RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 ZNF703Q9H7S9 590 aaPredicted RBP7.22□□□□□ -1.25
CD44-208ENST00000428726 TMEM9BQ9NQ34 198 aa7.22□□□□□ -1.25
CD44-208ENST00000428726 H7C2Y5 167 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 K7EM74 188 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 ATXN7O15265 892 aaPredicted RBP7.21□□□□□ -1.25
CD44-208ENST00000428726 SYNGR4O95473 234 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 CD8AP01732 235 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 PVALBP20472 110 aaPredicted RBP7.21□□□□□ -1.25
CD44-208ENST00000428726 PIGPP57054 158 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 SRSF4Q08170 494 aaKnown RBP7.21□□□□□ -1.25
CD44-208ENST00000428726 PNLIPRP3Q17RR3 467 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 MRPL21Q7Z2W9 205 aaKnown RBP7.21□□□□□ -1.25
CD44-208ENST00000428726 OR5M8Q8NGP6 311 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 SSC4DQ8WTU2 575 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 KCNE4Q8WWG9 221 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 SUCNR1Q9BXA5 334 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 CHST5Q9GZS9 411 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 SPRR3Q9UBC9 169 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 RNF150Q9ULK6 438 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 BOKQ9UMX3 212 aaPredicted RBP7.21□□□□□ -1.25
CD44-208ENST00000428726 ZNF175Q9Y473 711 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 TIMM10BQ9Y5J6 103 aa7.21□□□□□ -1.25
CD44-208ENST00000428726 CRYBG3Q68DQ2 2970 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 H0YL77 283 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 SIRPB1O00241 398 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 MFNGO00587 321 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 CNOT4O95628 575 aaKnown RBP7.21□□□□□ -1.26
CD44-208ENST00000428726 IL2RAP01589 272 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 OR5AC1P0C628 307 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 HLA-GP17693 338 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 GFRA1P56159 465 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 CLDN18P56856 261 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 MRPS34P82930 218 aaKnown RBP7.21□□□□□ -1.26
CD44-208ENST00000428726 FOXF2Q12947 444 aa7.21□□□□□ -1.26
CD44-208ENST00000428726 IAH1Q2TAA2 248 aaPredicted RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms