RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CLDN15P56746 228 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 OR1D5P58170 312 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 SSTP61278 116 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 CCL7P80098 99 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 TLE4Q04727 773 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 ELOBQ15370 118 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 NKAIN1Q4KMZ8 207 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 NMSQ5H8A3 153 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC16A13Q7RTY0 426 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 LYZL2Q7Z4W2 148 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 WDR5BQ86VZ2 330 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 OSR2Q8N2R0 312 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM24BQ8N5W8 94 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 OR10AD1Q8NGE0 317 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 OR5D13Q8NGL4 314 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 CPT1CQ8TCG5 803 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 DNASE2BQ8WZ79 361 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 PIGTQ969N2 578 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 PSMG3Q9BT73 122 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 METTL7AQ9H8H3 244 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 NXT1Q9UKK6 140 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 MRPS18CQ9Y3D5 142 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 TRBV24-1A0A075B6N3 115 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 C3orf85A0A1B0GTC6 90 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF724A8MTY0 619 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 NPIPB11E5RHQ5 1161 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 H3BQ15 152 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 DFFBO76075 338 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 DIRAS3O95661 229 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 NAPSAO96009 420 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ATP6V0CP27449 155 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 LTBRP36941 435 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 TAGLN2P37802 199 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 CEACAM6P40199 344 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 CLDN17P56750 224 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 RBM11P57052 281 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF616Q08AN1 781 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ICAM4Q14773 271 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 IGF2-ASQ6U949 168 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ETV3LQ6ZN32 361 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 C7orf61Q8IZ16 206 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 H1FOOQ8IZA3 346 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 OR52M1Q8NGK5 317 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 RNASEH2CQ8TDP1 164 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 TVP23CQ96ET8 276 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 DNAJA3Q96EY1 480 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 BSCL2Q96G97 398 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 LIN37Q96GY3 246 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 RASL10BQ96S79 203 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 SPSB2Q99619 263 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 NUDT22Q9BRQ3 303 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 PAPOLGQ9BWT3 736 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 CTDSP1Q9GZU7 261 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 RIMS4Q9H426 269 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 KMT2EQ8IZD2 1858 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 IGKV1-27A0A075B6S5 117 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 hCG_38984A0A1B0GV85 526 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF850A8MQ14 1090 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF891A8MT65 544 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 H0Y980 276 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 PHOX2AO14813 284 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 AGPAT2O15120 278 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 XRCC2O43543 280 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 SCAF4O95104 1147 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 PPYP01298 95 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H1BP16401 226 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 TCN2P20062 427 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 FUT3P21217 361 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 VDAC1P21796 283 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 NKX2-1P43699 371 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 TAS2R30P59541 319 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 MALLQ13021 153 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 DAZAP2Q15038 168 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 MPV17LQ2QL34 196 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 DEFB133Q30KQ1 61 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 COA6Q5JTJ3 125 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 KRBOX4Q5JUW0 171 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 MRPL14Q6P1L8 145 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 COLCA1Q6ZS62 124 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 CENPVQ7Z7K6 275 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 TMEM252Q8N6L7 170 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 SLC35G3Q8N808 338 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ZIC4Q8N9L1 334 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF610Q8N9Z0 462 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 TSTD1Q8NFU3 115 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 OR10G3Q8NGC4 313 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 OR5R1Q8NH85 324 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 CLDND2Q8NHS1 167 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 M1APQ8TC57 530 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 MBD3L1Q8WWY6 194 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 FBXO17Q96EF6 278 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 AGMATQ9BSE5 352 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 FAAP24Q9BTP7 215 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 PRDM14Q9GZV8 571 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 NKX2-4Q9H2Z4 354 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 MS4A5Q9H3V2 200 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 GAR1Q9NY12 217 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 CISD1Q9NZ45 108 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 ALPK2Q86TB3 2170 aa4.96□□□□□ -1.62
CCDC88A-203ENST00000412148 LOC102723971A0A1B0GUV8 181 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms