RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NINJ1Q92982 152 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 RAB3CQ96E17 227 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 WDFY2Q96P53 400 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 PLEKHJ1Q9NW61 149 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 A0A0A6YYH2 397 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 NKX6-3A6NJ46 265 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 A6NJ64 397 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 RAB27BO00194 218 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 IGHV2-70P01814 119 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 CSF3P09919 207 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 FUT3P21217 361 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 COL10A1Q03692 680 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 SPANXN2Q5MJ10 180 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 STUMQ69YW2 141 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 Q6P435 159 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 MUC20Q8N307 709 aaPredicted RBP15.12■□□□□ 0.01
SDC1-203ENST00000403076 CD177Q8N6Q3 437 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 ASCC1Q8N9N2 400 aaKnown RBP15.12■□□□□ 0.01
SDC1-203ENST00000403076 CCL13Q99616 98 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 TMEM246Q9BRR3 403 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 ZNF665Q9H7R5 613 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 SPACA1Q9HBV2 294 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 ZNF581Q9P0T4 197 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 FABP12A6NFH5 140 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 XRCC3O43542 346 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 NDUFA2O43678 99 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 PDCD6O75340 191 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 TMEM50BP56557 158 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 CDNFQ49AH0 187 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 PAN3Q58A45 887 aaKnown RBP15.11■□□□□ 0.01
SDC1-203ENST00000403076 SIGIRRQ6IA17 410 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 BRICD5Q6PL45 260 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 FAM131AQ6UXB0 335 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 LRRC75A-AS1Q8N1F1 130 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 ARHGAP5-AS1Q96IT6 56 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 PIMREGQ9BSJ6 248 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 PCDHB10Q9UN67 800 aa15.11■□□□□ 0.01
SDC1-203ENST00000403076 CELSR2Q9HCU4 2923 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 POLQO75417 2590 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 MCRIP1C9JLW8 97 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 HSPB6O14558 160 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 ADAM20O43506 726 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 CHATP28329 748 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 MNDAP41218 407 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 DSCR9P59020 149 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 IL18Q14116 193 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 SLC36A1Q7Z2H8 476 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 C6orf201Q7Z4U5 140 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 SUMF2Q8NBJ7 301 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 MBD6Q96DN6 1003 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 PECRQ9BY49 303 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 NARFLQ9H6Q4 476 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 ZMAT3Q9HA38 289 aaKnown RBP15.1■□□□□ 0.01
SDC1-203ENST00000403076 SEBOXQ9HB31 216 aaPredicted RBP15.1■□□□□ 0.01
SDC1-203ENST00000403076 METRNQ9UJH8 293 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 ZNF222Q9UK12 451 aa15.1■□□□□ 0.01
SDC1-203ENST00000403076 TRAV24A0A0B4J272 114 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 UBE2QL1A1L167 161 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 NDUFS8O00217 210 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 SLC33A1O00400 549 aaPredicted RBP15.09■□□□□ 0.01
SDC1-203ENST00000403076 TMPRSS2O15393 492 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 FSTL3O95633 263 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 GNB3P16520 340 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 GIFP27352 417 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 TAS2R20P59543 309 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 IL13RA1P78552 427 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 RBM39Q14498 530 aaKnown RBP15.09■□□□□ 0.01
SDC1-203ENST00000403076 ARL6IP1Q15041 203 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 BAIAP2L2Q6UXY1 529 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 ZNF788Q6ZQV5 615 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 DCDC5Q6ZRR9 648 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 CCDC190Q86UF4 302 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 BPIFB2Q8N4F0 458 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 SPICQ8N5J4 248 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 PPP1R35Q8TAP8 253 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 MED30Q96HR3 178 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 DPCDQ9BVM2 203 aaPredicted RBP15.09■□□□□ 0.01
SDC1-203ENST00000403076 DNTTIP1Q9H147 329 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 IFT22Q9H7X7 185 aa15.09■□□□□ 0.01
SDC1-203ENST00000403076 FOXI3A8MTJ6 420 aaPredicted RBP15.08■□□□□ 0.01
SDC1-203ENST00000403076 HIST1H1DP16402 221 aaKnown RBP15.08■□□□□ 0.01
SDC1-203ENST00000403076 AMY2BP19961 511 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 LMO1P25800 156 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 TMEM155Q4W5P6 130 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 PLAC9Q5JTB6 97 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 ATPAF1Q5TC12 328 aaPredicted RBP15.08■□□□□ 0.01
SDC1-203ENST00000403076 LYPD2Q6UXB3 125 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 SNX29P2Q8IUI4 249 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 ZNF561Q8N587 486 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 ZNRF1Q8ND25 227 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 TMEM185AQ8NFB2 350 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 C10orf105Q8TEF2 133 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 SDSLQ96GA7 329 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 GAFA1Q96PS6 74 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 NUDT16L1Q9BRJ7 211 aaKnown RBP15.08■□□□□ 0.01
SDC1-203ENST00000403076 FAAP24Q9BTP7 215 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 BPESC1Q9GZL8 116 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 PPA2Q9H2U2 334 aa15.08■□□□□ 0.01
SDC1-203ENST00000403076 RCC2Q9P258 522 aaKnown RBP15.08■□□□□ 0.01
SDC1-203ENST00000403076 HSF4Q9ULV5 492 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 697.7 ms