RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PGLYRP3Q96LB9 341 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 HIST1H4GQ99525 98 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PECRQ9BY49 303 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 MIEF1Q9NQG6 463 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 XCL2Q9UBD3 114 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CD84Q9UIB8 345 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 VAX2Q9UIW0 290 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SIGLEC9Q9Y336 463 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PHF3Q92576 2039 aaKnown RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PIK3C2BO00750 1634 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 NOS1P29475 1434 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CEP162Q5TB80 1403 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ADAMTS13Q76LX8 1427 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CLUHO75153 1309 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 IGHV1OR15-1A0A075B7D0 117 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 TGIF2-C20orf24A0A0A6YYL0 155 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 DAPL1A0PJW8 107 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PPP5D1E7EU14 171 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 LINC01619G3V211 115 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 NTN3O00634 580 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SNAP91O60641 907 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 MT-CO2P00403 227 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 RCC1P18754 421 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ALOX5APP20292 161 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 RAB3AP20336 220 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PRKACGP22612 351 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 RPL12P30050 165 aaKnown RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SLC6A1P30531 599 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PHBP35232 272 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 NAA20P61599 178 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ELF3P78545 371 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR1Q1Q15612 314 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PRSS8Q16651 343 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 LRRC75BQ2VPJ9 315 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CEACAM16Q2WEN9 425 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 FAM71E1Q6IPT2 247 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 REG3GQ6UW15 175 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CXCL17Q6UXB2 119 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 BAIAP2L2Q6UXY1 529 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 FAM231DQ6ZW35 169 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CDC20BQ86Y33 519 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CBR4Q8N4T8 237 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR8J3Q8NGG0 315 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR13G1Q8NGZ3 307 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 PDXPQ96GD0 296 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 MIXL1Q9H2W2 232 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 BIN3Q9NQY0 253 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 RBM22Q9NW64 420 aaKnown RBP eCLIP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ANXA10Q9UJ72 324 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 VPREB3Q9UKI3 123 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 MOKQ9UQ07 419 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SNX10Q9Y5X0 201 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ERBINQ96RT1 1412 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 TRAV8-4A0A0B4J246 113 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 TRAV39A0A0B4J263 110 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 DHRS7CA6NNS2 312 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 SMIM1B2RUZ4 78 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 FAM25AB3EWG3 89 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 FAM25CB3EWG5 89 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 FAM25GB3EWG6 89 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 K7EP13 123 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 K7N7A8 449 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 AGPAT2O15120 278 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 S1PR2O95136 353 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 VENTXO95231 258 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 SOX14O95416 240 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 C6orf47O95873 294 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 IFNA1P01562 189 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 IFNA10P01566 189 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 IGLV2-11P01706 119 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 P01737 135 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 SEMG1P04279 462 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 HPNP05981 417 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 EIF4EP06730 217 aaKnown RBP3.18□□□□□ -1.9
HMGB1-204ENST00000399489 OR5H8P0DN80 308 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 LAMP1P11279 417 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 AQP1P29972 269 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 TSPOP30536 169 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 MYCNOSP40205 109 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 PRR3P79522 188 aaKnown RBP3.18□□□□□ -1.9
HMGB1-204ENST00000399489 PPP1R1AQ13522 171 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 OR2F1Q13607 317 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF266Q14584 549 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF235Q14590 738 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 SHHQ15465 462 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 LIN52Q52LA3 116 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 N4BP2L1Q5TBK1 243 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-204ENST00000399489 ANKRD22Q5VYY1 191 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 XKRXQ6PP77 449 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 GDPGP1Q6ZNW5 385 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 PEX26Q7Z412 305 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 EIF4E3Q8N5X7 224 aaKnown RBP3.18□□□□□ -1.9
HMGB1-204ENST00000399489 NPWQ8N729 165 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 CHST4Q8NCG5 386 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 SLC26A10Q8NG04 563 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 OR2M7Q8NG81 312 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 OR6N1Q8NGY5 312 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF519Q8TB69 540 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 CD200R1Q8TD46 325 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 RXFP2Q8WXD0 754 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms