RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FTMTQ8N4E7 242 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 UXS1Q8NBZ7 420 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 OR10K1Q8NGX5 313 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 OR4K15Q8NH41 348 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 TM2D1Q9BX74 207 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 MS4A5Q9H3V2 200 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 PLK3Q9H4B4 646 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 UBTD1Q9HAC8 227 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ELL3Q9HB65 397 aaPredicted RBP8.68□□□□□ -1.02
VPS53-202ENST00000389040 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS53-202ENST00000389040 BEX4Q9NWD9 120 aaPredicted RBP8.68□□□□□ -1.02
VPS53-202ENST00000389040 VSIG4Q9Y279 399 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 DCHS2Q6V1P9 2916 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 hCG_38984A0A1B0GV85 526 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 OVOL3O00110 214 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 SIX6O95475 246 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 IGHV3-13P01766 116 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 PMP2P02689 132 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 IFNA6P05013 189 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 CCL2P13500 99 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 RAC2P15153 192 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 SELEP16581 610 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 CPT2P23786 658 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 WNT5AP41221 380 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 CBX5P45973 191 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 PPP1CBP62140 327 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 FAM3AP98173 230 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 DHODHQ02127 395 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ZNF92Q03936 586 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ARFRP1Q13795 201 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 MPPED2Q15777 294 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 SWI5Q1ZZU3 235 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ACTBL2Q562R1 376 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 FAM209AQ5JX71 171 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 FBXW12Q6X9E4 464 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 LRRC75A-AS1Q8N1F1 130 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ZDHHC22Q8N966 263 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 OR8H1Q8NGG4 311 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 OR1J1Q8NGS3 322 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ASB13Q8WXK3 278 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 MRGPRFQ96AM1 343 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 MARS2Q96GW9 593 aaKnown RBP8.68□□□□□ -1.02
VPS53-202ENST00000389040 OCSTAMPQ9BR26 566 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 OPN4Q9UHM6 478 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 FLNBO75369 2602 aaKnown RBP8.68□□□□□ -1.02
VPS53-202ENST00000389040 FAM230AA0A1W2PPH8 454 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 F5H5P2 479 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 XRCC2O43543 280 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 RGS11O94810 467 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 TMEM225BP0DP42 221 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 BLVRBP30043 206 aaPredicted RBP8.67□□□□□ -1.02
VPS53-202ENST00000389040 HTR2BP41595 481 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 RBP2P50120 134 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 PPOXP50336 477 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 KLF3P57682 345 aaPredicted RBP8.67□□□□□ -1.02
VPS53-202ENST00000389040 DHRS2Q13268 280 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 GK2Q14410 553 aaPredicted RBP8.67□□□□□ -1.02
VPS53-202ENST00000389040 ARL6IP1Q15041 203 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 OR8B8Q15620 311 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 MICBQ29980 383 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 VAX1Q5SQQ9 334 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 ZBTB37Q5TC79 503 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 C11orf88Q6PI97 169 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 TEX261Q6UWH6 196 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 C17orf107Q6ZR85 190 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 LHFPL2Q6ZUX7 228 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 C12orf45Q8N5I9 185 aaPredicted RBP8.67□□□□□ -1.02
VPS53-202ENST00000389040 ST8SIA4Q92187 359 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 SPSB4Q96A44 273 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 WDR89Q96FK6 387 aaPredicted RBP8.67□□□□□ -1.02
VPS53-202ENST00000389040 CCL19Q99731 98 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 TMPRSS13Q9BYE2 586 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 HEXA-AS1Q9H8Q6 139 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 ZNF701Q9NV72 531 aaPredicted RBP8.67□□□□□ -1.02
VPS53-202ENST00000389040 U3KQ87 197 aa8.67□□□□□ -1.02
VPS53-202ENST00000389040 RTTNQ86VV8 2226 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 IGKV1-27A0A075B6S5 117 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 PLSCR5A0PG75 271 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 OR2AT4A6NND4 320 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 SERPINE3A8MV23 424 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 SNAPC5O75971 98 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 SLC22A5O76082 557 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 NRASP01111 189 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 HLA-AP01891 365 aaKnown RBP8.66□□□□□ -1.02
VPS53-202ENST00000389040 RSU1Q15404 277 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 DCAF12L2Q5VW00 463 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 C11orf71Q6IPW1 123 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 SLC25A42Q86VD7 318 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 ARRDC1Q8N5I2 433 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 KLF14Q8TD94 323 aaPredicted RBP8.66□□□□□ -1.02
VPS53-202ENST00000389040 BORCS8Q96FH0 119 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 CYYR1Q96J86 154 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 Q96M66 194 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 TECTBQ96PL2 329 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 DIRC2Q96SL1 478 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 PECRQ9BY49 303 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 METTL9Q9H1A3 318 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 TMEM165Q9HC07 324 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 LAMP3Q9UQV4 416 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 NOP16Q9Y3C1 178 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms