RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 OR4D10Q8NGI6 311 aa22.61■■□□□ 1.21
MSX1-201ENST00000382723 MAFIPQ8WZ33 124 aa22.61■■□□□ 1.21
MSX1-201ENST00000382723 RDH5Q92781 318 aa22.61■■□□□ 1.21
MSX1-201ENST00000382723 CMSS1Q9BQ75 279 aaKnown RBP22.61■■□□□ 1.21
MSX1-201ENST00000382723 ZNF701Q9NV72 531 aaPredicted RBP22.61■■□□□ 1.21
MSX1-201ENST00000382723 RCC2Q9P258 522 aaKnown RBP22.61■■□□□ 1.21
MSX1-201ENST00000382723 FAM221AA4D161 298 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 SIRPB1O00241 398 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 CA11O75493 328 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 CD55P08174 381 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 CEBPDP49716 269 aaPredicted RBP22.6■■□□□ 1.21
MSX1-201ENST00000382723 TAS2R19P59542 299 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 Q6P435 159 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 TMEM229BQ8NBD8 167 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 SUMF2Q8NBJ7 301 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 OR10Z1Q8NGY1 313 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 NEK7Q8TDX7 302 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 OCSTAMPQ9BR26 566 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 MS4A5Q9H3V2 200 aa22.6■■□□□ 1.21
MSX1-201ENST00000382723 ZNF736B4DX44 427 aaPredicted RBP22.59■■□□□ 1.21
MSX1-201ENST00000382723 AKAIN1P0CW23 69 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 ZNF146Q15072 292 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 SWI5Q1ZZU3 235 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 SMIM21Q3B7S5 101 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 SPIN3Q5JUX0 258 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 STEAP1BQ6NZ63 245 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 GCSAMQ8N6F7 178 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 OR4C16Q8NGL9 310 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 PPP1R3CQ9UQK1 317 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 TRAV24A0A0B4J272 114 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 SRRM5B3KS81 715 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 MCRIP1C9JLW8 97 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 M0QYG6 137 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 SH2D1BO14796 132 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 OR2H2O95918 312 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 TNFRSF1AP19438 455 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 GIFP27352 417 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 CBX5P45973 191 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 CCR6P51684 374 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 EGLN1Q9GZT9 426 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 SAP30LQ9HAJ7 183 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 SPACA1Q9HBV2 294 aa22.59■■□□□ 1.21
MSX1-201ENST00000382723 HAND1O96004 215 aa22.58■■□□□ 1.21
MSX1-201ENST00000382723 SLC6A1P30531 599 aa22.58■■□□□ 1.21
MSX1-201ENST00000382723 CFHR2P36980 270 aa22.58■■□□□ 1.21
MSX1-201ENST00000382723 SNRPD2P62316 118 aaKnown RBP22.58■■□□□ 1.21
MSX1-201ENST00000382723 TESK1Q15569 626 aa22.58■■□□□ 1.21
MSX1-201ENST00000382723 FAM209AQ5JX71 171 aa22.58■■□□□ 1.21
MSX1-201ENST00000382723 TGIF2LYQ8IUE0 185 aa22.58■■□□□ 1.21
MSX1-201ENST00000382723 SNAPC3Q92966 411 aa22.58■■□□□ 1.21
MSX1-201ENST00000382723 DPCDQ9BVM2 203 aaPredicted RBP22.58■■□□□ 1.21
MSX1-201ENST00000382723 TFF1P04155 84 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 FAUP35544 74 aaKnown RBP22.57■■□□□ 1.2
MSX1-201ENST00000382723 OR5T2Q8NGG2 359 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 RNF7Q9UBF6 113 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 H3BUI4 141 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 RAB3DO95716 219 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 CYB5R3P00387 301 aaPredicted RBP22.57■■□□□ 1.2
MSX1-201ENST00000382723 OR11L1Q8NGX0 322 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 OR56B4Q8NH76 319 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 ERGIC1Q969X5 290 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 CACNG6Q9BXT2 260 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 TINAGL1Q9GZM7 467 aaPredicted RBP22.57■■□□□ 1.2
MSX1-201ENST00000382723 IFT22Q9H7X7 185 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 RASL12Q9NYN1 266 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 DNAJB11Q9UBS4 358 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 GLS2Q9UI32 602 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 ZNF107Q9UII5 783 aaPredicted RBP22.57■■□□□ 1.2
MSX1-201ENST00000382723 ANAPC10Q9UM13 185 aa22.57■■□□□ 1.2
MSX1-201ENST00000382723 FLNCQ14315 2725 aa22.56■■□□□ 1.2
MSX1-201ENST00000382723 IGHV3OR15-7A0A075B7D8 119 aa22.56■■□□□ 1.2
MSX1-201ENST00000382723 NAP1L6A6NFF2 107 aa22.56■■□□□ 1.2
MSX1-201ENST00000382723 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP22.56■■□□□ 1.2
MSX1-201ENST00000382723 CSN2P05814 226 aa22.56■■□□□ 1.2
MSX1-201ENST00000382723 FAM201AQ5SY85 155 aa22.56■■□□□ 1.2
MSX1-201ENST00000382723 HOGA1Q86XE5 327 aa22.56■■□□□ 1.2
MSX1-201ENST00000382723 VRK1Q99986 396 aaPredicted RBP22.56■■□□□ 1.2
MSX1-201ENST00000382723 DPAGT1Q9H3H5 408 aa22.56■■□□□ 1.2
MSX1-201ENST00000382723 CHD3Q12873 2000 aaKnown RBP22.55■■□□□ 1.2
MSX1-201ENST00000382723 A0A1W2PPR1 153 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 RFPL4AA6NLU0 287 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 RFPL4AL1F8VTS6 287 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 SLC33A1O00400 549 aaPredicted RBP22.55■■□□□ 1.2
MSX1-201ENST00000382723 KNG1P01042 644 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 LHBP01229 141 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 AMY2BP19961 511 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 PLA1AQ53H76 456 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 PAN3Q58A45 887 aaKnown RBP22.55■■□□□ 1.2
MSX1-201ENST00000382723 PLET1Q6UQ28 207 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 DUSP18Q8NEJ0 188 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 BEST4Q8NFU0 473 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 CHMP1AQ9HD42 196 aaPredicted RBP22.55■■□□□ 1.2
MSX1-201ENST00000382723 C12orf4Q9NQ89 552 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 ZNF205O95201 554 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 FCGR3AP08637 254 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 IRF2P14316 349 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 CD80P33681 288 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 HRH1P35367 487 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 SRSF1Q07955 248 aaKnown RBP eCLIP22.55■■□□□ 1.2
MSX1-201ENST00000382723 ZNF782Q6ZMW2 699 aaPredicted RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms