RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 DANCRP0C864 163 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 OR13C7P0DN81 318 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 OTX1P32242 354 aaPredicted RBP14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 OR2B8PP59922 312 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 TMEM123Q8N131 208 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 FAM24BQ8N5W8 94 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 ZIC4Q8N9L1 334 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 CACNA1HO95180 2353 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 C5orf52A6NGY3 159 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 FAM166BA8MTA8 275 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 SGCEO43556 437 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 MEX3BQ6ZN04 569 aaKnown RBP14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 AAED1Q7RTV5 226 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 OR10AD1Q8NGE0 317 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 ABHD3Q8WU67 409 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 HPSE2Q8WWQ2 592 aa14.08□□□□□ -0.16
NKX3-1-201ENST00000380871 FOLR2P14207 255 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 TRA2AQ13595 282 aaKnown RBP eCLIP14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 SUMF1Q8NBK3 374 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 CD300LFQ8TDQ1 290 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 TMEM54Q969K7 222 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 EGLN1Q9GZT9 426 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 DECR2Q9NUI1 292 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 E5RGE8 158 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 EIF1BO60739 113 aaKnown RBP14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 ZNF133P52736 654 aaPredicted RBP14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 RAC1P63000 192 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 FABP9Q0Z7S8 132 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 C10orf128Q5T292 105 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 SLC23A3Q6PIS1 610 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 TMEM182Q6ZP80 229 aaPredicted RBP14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 ABHD14AQ9BUJ0 271 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 C19orf12Q9NSK7 152 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 NECAP2Q9NVZ3 263 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 NSG2Q9Y328 171 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 LNP1A1A4G5 178 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 UMAD1C9J7I0 102 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 S100A6P06703 90 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 FBXL14Q8N1E6 418 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 RARRES2Q99969 163 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 METTL9Q9H1A3 318 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 FOXJ2Q9P0K8 574 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 LRFN1Q9P244 771 aa14.07□□□□□ -0.16
NKX3-1-201ENST00000380871 GPR37O15354 613 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 PHF1O43189 567 aaPredicted RBP14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 CELA3AP09093 270 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 ITGA3P26006 1051 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 CHATP28329 748 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 CYB561P49447 251 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 CLINT1Q14677 625 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 DHRS13Q6UX07 377 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 FBXW12Q6X9E4 464 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 GPR137CQ8N3F9 429 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 OR10D3Q8NH80 312 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 PLEKHA2Q9HB19 425 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 KCNIP3Q9Y2W7 256 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 A0A087WZY1 265 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 ADAM5Q6NVV9 412 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 FAM213BQ8TBF2 198 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 TP53RKQ96S44 253 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 ARV1Q9H2C2 271 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 FREM1Q5H8C1 2179 aa14.06□□□□□ -0.16
NKX3-1-201ENST00000380871 LOC102725191A0A1B0GVB3 256 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 ZNF14P17017 642 aaPredicted RBP14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 OMGP23515 440 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 ZNF239Q16600 458 aaKnown RBP14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 CEACAM16Q2WEN9 425 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 MSI2Q96DH6 328 aaKnown RBP14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 A0A096LPE4 126 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 A0A1W2PPZ6 126 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 NXPH3O95157 252 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 NQO2P16083 231 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 ZNF32P17041 273 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 P2RY1P47900 373 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 CLDN15P56746 228 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 HIST1H3AP68431 136 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 C3AR1Q16581 482 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 HIST2H3PS2Q5TEC6 136 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 HIST2H3AQ71DI3 136 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 SLC35G3Q8N808 338 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 SPTSSAQ969W0 71 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 C18orf12Q96KH6 178 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 POMT1Q9Y6A1 747 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 MED13Q9UHV7 2174 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 CCL20P78556 96 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 LIAT1Q6ZQX7 453 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 FGFBP3Q8TAT2 258 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 LUZP4Q9P127 313 aa14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 FOXD3Q9UJU5 478 aaPredicted RBP14.05□□□□□ -0.16
NKX3-1-201ENST00000380871 CDRT15L2A8MXV6 281 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 CA11O75493 328 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 MT-ND4LP03901 98 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 CCL2P13500 99 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 AGAP20933 346 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 HTR5AP47898 357 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 SULT1A1P50225 295 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 IGSF11Q5DX21 431 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 SGCZQ96LD1 299 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 GINS3Q9BRX5 216 aa14.04□□□□□ -0.16
NKX3-1-201ENST00000380871 STRADBQ9C0K7 418 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms