RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 VMO1Q7Z5L0 202 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 TPRX1Q8N7U7 411 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 OR4S1Q8NGB4 309 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 LHX4Q969G2 390 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 MUL1Q969V5 352 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 SNX22Q96L94 193 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 YTHDF1Q9BYJ9 559 aaKnown RBP10.99□□□□□ -0.65
VPS28-202ENST00000377348 FAM234AQ9H0X4 552 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 METTL9Q9H1A3 318 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 KPTNQ9Y664 436 aa10.99□□□□□ -0.65
VPS28-202ENST00000377348 DNHD1Q96M86 4753 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 COL6A5A8TX70 2615 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 CENPVL3A0A0U1RRI6 287 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 A0A1W2PP11 408 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 SH2D1BO14796 132 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 MRPS14O60783 128 aaKnown RBP10.98□□□□□ -0.65
VPS28-202ENST00000377348 ZNF44P15621 663 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 CCL3L1P16619 93 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 OR3A1P47881 315 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 ERVFRD-1P60508 538 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 FABP5Q01469 135 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 ZNF273Q14593 569 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 GRK1Q15835 563 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 KRTAP21-3Q3LHN1 58 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 PIGYQ3MUY2 71 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 HSD17B12Q53GQ0 312 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 GPR157Q5UAW9 335 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 TMEM200BQ69YZ2 307 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 ELP2Q6IA86 826 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 Q6P435 159 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 METAP1DQ6UB28 335 aaPredicted RBP10.98□□□□□ -0.65
VPS28-202ENST00000377348 GDPD3Q7L5L3 318 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 LRRTM1Q86UE6 522 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 LYPD6Q86Y78 171 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 CMTM4Q8IZR5 234 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 OR8H2Q8N162 312 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 BPIFB2Q8N4F0 458 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 SVOPQ8N4V2 548 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 KIR3DL3Q8N743 410 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 OR4D6Q8NGJ1 314 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 THRSPQ92748 146 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 MS4A7Q9GZW8 240 aaPredicted RBP10.98□□□□□ -0.65
VPS28-202ENST00000377348 SEBOXQ9HB31 216 aaPredicted RBP10.98□□□□□ -0.65
VPS28-202ENST00000377348 RHOFQ9HBH0 211 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 TCF7L1Q9HCS4 588 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 ZNF581Q9P0T4 197 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 GLS2Q9UI32 602 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 MRPS28Q9Y2Q9 187 aaKnown RBP10.98□□□□□ -0.65
VPS28-202ENST00000377348 LRRC42Q9Y546 428 aa10.98□□□□□ -0.65
VPS28-202ENST00000377348 A0A0G2JK05 382 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 MDFIC2A0A1B0GVS7 189 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 SLC33A1O00400 549 aaPredicted RBP10.97□□□□□ -0.65
VPS28-202ENST00000377348 HSPB6O14558 160 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 DEGS1O15121 323 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 TCF21O43680 179 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 VENTXO95231 258 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 UCHL1P09936 223 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 SRMP19623 302 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 SERPINA2P20848 420 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 FPR2P25090 351 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 KLRD1Q13241 179 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 SCGB2A2Q13296 93 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 SLC22A6Q4U2R8 563 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 UBE2UQ5VVX9 321 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 AWAT2Q6E213 333 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 ZNF773Q6PK81 442 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 GLIPR1L1Q6UWM5 242 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 TCF23Q7RTU1 214 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 SIGLECL1Q8N7X8 197 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 Q8NFD4 153 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 OR51T1Q8NGJ9 327 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 OR5D13Q8NGL4 314 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 TNFRSF14Q92956 283 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 ZNF48Q96MX3 618 aaPredicted RBP10.97□□□□□ -0.65
VPS28-202ENST00000377348 S100A13Q99584 98 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 PPA2Q9H2U2 334 aa10.97□□□□□ -0.65
VPS28-202ENST00000377348 A0A1W2PRD5 423 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 A0A1W2PRF3 423 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 A0A1W2PRM7 423 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 RNASEK-C17orf49H0YIS7 233 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 M0R1W7 72 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 CSTBP04080 98 aaKnown RBP10.96□□□□□ -0.65
VPS28-202ENST00000377348 LMO1P25800 156 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 PSMB9P28065 219 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 GABRA5P31644 462 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 BMXP51813 675 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 TRAM1Q15629 374 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 OSR2Q8N2R0 312 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 PNKDQ8N490 385 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 C11orf42Q8N5U0 333 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 NKAIN3Q8N8D7 197 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 ZNF418Q8TF45 676 aaPredicted RBP10.96□□□□□ -0.65
VPS28-202ENST00000377348 PHYHIPQ92561 330 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 DMRTB1Q96MA1 342 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 MDFIQ99750 246 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 ING3Q9NXR8 418 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 IL36GQ9NZH8 169 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 ST3GAL6Q9Y274 331 aa10.96□□□□□ -0.65
VPS28-202ENST00000377348 TRAV24A0A0B4J272 114 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 IGHV1-69DA0A0B4J2H0 117 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms