RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DOCK2Q92608 1830 aa10.41□□□□□ -0.74
VPS13A-205ENST00000376636 SRSF10O75494 262 aaKnown RBP10.41□□□□□ -0.74
VPS13A-205ENST00000376636 CSNK1EP49674 416 aaKnown RBP10.41□□□□□ -0.74
VPS13A-205ENST00000376636 ADAMTS17Q8TE56 1095 aa10.41□□□□□ -0.74
VPS13A-205ENST00000376636 COL2A1P02458 1487 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-205ENST00000376636 P2RY1P47900 373 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 PRSS54Q6PEW0 395 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 PTX4Q96A99 478 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 HIST1H1DP16402 221 aaKnown RBP10.4□□□□□ -0.74
VPS13A-205ENST00000376636 DSCR4P56555 118 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-205ENST00000376636 HTRA3P83110 453 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 ZNF77Q15935 545 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 DLEU7Q6UYE1 221 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 ASCL5Q7RTU5 278 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 MS4A6EQ96DS6 147 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 UQCR10Q9UDW1 63 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 NGFP01138 241 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 HTN1P15515 57 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 AVPR2P30518 371 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 KLF3P57682 345 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-205ENST00000376636 C10orf113Q5VZT2 155 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 AFMIDQ63HM1 303 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 SNURFLB1AK76 121 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 PXNP49023 591 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-205ENST00000376636 PPP1R1AQ13522 171 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 COMPP49747 757 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-205ENST00000376636 PRSS8Q16651 343 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 LEMD1Q68G75 181 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 OR13G1Q8NGZ3 307 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 DYNLRB2Q8TF09 96 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 C1RLQ9NZP8 487 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 PPIL1Q9Y3C6 166 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 MBLAC1A4D2B0 266 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-205ENST00000376636 NCMAPQ5T1S8 102 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 PAQR6Q6TCH4 344 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 Q6ZSR9 355 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 MRGPREQ86SM8 312 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 OTOSQ8NHW6 89 aa10.4□□□□□ -0.74
VPS13A-205ENST00000376636 A0A0U1RQS6 177 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 TSPAN12O95859 305 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 OR10V1Q8NGI7 309 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 SFT2D2O95562 160 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 CRHP06850 196 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 GNG10P50151 68 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 ZXDAP98168 799 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 TMEM207Q6UWW9 146 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 GUCD1Q96NT3 240 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 CLEC1BQ9P126 229 aa10.4□□□□□ -0.75
VPS13A-205ENST00000376636 LPAR6P43657 344 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 NAT2P11245 290 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 ZNF273Q14593 569 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 HERPUD1Q15011 391 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 KISS1Q15726 138 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 TBX21Q9UL17 535 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 MT-ND6P03923 174 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 SLC25A30Q5SVS4 291 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 KMT5CQ86Y97 462 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 OR4C3Q8NH37 302 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 LRP12Q9Y561 859 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 PSG5Q15238 335 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 MRGPRGQ86SM5 289 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 RAB1BQ9H0U4 201 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 HES3Q5TGS1 186 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 OR8I2Q8N0Y5 310 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 DEFB127Q9H1M4 99 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 ERRFI1Q9UJM3 462 aaPredicted RBP10.39□□□□□ -0.75
VPS13A-205ENST00000376636 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 LGALS3P17931 250 aaKnown RBP10.39□□□□□ -0.75
VPS13A-205ENST00000376636 GLCCI1Q86VQ1 547 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 WFIKKN1Q96NZ8 548 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 WDR13Q9H1Z4 485 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 GEMIN2O14893 280 aaKnown RBP10.39□□□□□ -0.75
VPS13A-205ENST00000376636 TMEM33P57088 247 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 FAM53AQ6NSI3 398 aaPredicted RBP10.39□□□□□ -0.75
VPS13A-205ENST00000376636 SIGLEC11Q96RL6 698 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 INTS1Q8N201 2190 aaKnown RBP10.39□□□□□ -0.75
VPS13A-205ENST00000376636 RNF224P0DH78 156 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 IER3P46695 156 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 MUC20Q8N307 709 aaPredicted RBP10.39□□□□□ -0.75
VPS13A-205ENST00000376636 ARHGAP5-AS1Q96IT6 56 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 PRELID3AQ96N28 172 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 MYO7BQ6PIF6 2116 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 MPDU1O75352 247 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 MRPL58Q14197 206 aaKnown RBP10.39□□□□□ -0.75
VPS13A-205ENST00000376636 C1orf220Q5T0J3 134 aa10.39□□□□□ -0.75
VPS13A-205ENST00000376636 C5P01031 1676 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 TMEM272A0A1B0GTI8 110 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 GHRHP01286 108 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 FLYWCH2Q96CP2 140 aaKnown RBP10.38□□□□□ -0.75
VPS13A-205ENST00000376636 PRR14Q9BWN1 585 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 B4E171 279 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 PPIHO43447 177 aaKnown RBP10.38□□□□□ -0.75
VPS13A-205ENST00000376636 SPATA46Q5T0L3 261 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 SPRY3O43610 288 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 SURF2Q15527 256 aaPredicted RBP10.38□□□□□ -0.75
VPS13A-205ENST00000376636 SP6Q3SY56 376 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 Q8WTZ3 238 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 DOT1LQ8TEK3 1739 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 MAVSQ7Z434 540 aa10.38□□□□□ -0.75
VPS13A-205ENST00000376636 PMCHL2Q9BQD1 86 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms