RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 NRASP01111 189 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 OR4Q2P0C623 313 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 SDC1P18827 310 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 FASP25445 335 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 NMBRP28336 390 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 OR3A2P47893 321 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 EMP1P54849 157 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 EPGNQ6UW88 154 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 CDC20BQ86Y33 519 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 FAM90A1Q86YD7 464 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 ZNF295-AS1Q8N0V1 137 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 ZNF439Q8NDP4 499 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 OR11G2Q8NGC1 345 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 MFSD8Q8NHS3 518 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 RNF141Q8WVD5 230 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 ACKR4Q9NPB9 350 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 IKZF2Q9UKS7 526 aa6.87□□□□□ -1.31
USP48-203ENST00000374732 FNDC3AQ9Y2H6 1198 aaKnown RBP6.87□□□□□ -1.31
USP48-203ENST00000374732 NYNRINQ9P2P1 1898 aaKnown RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 UTRNP46939 3433 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 SHROOM3Q8TF72 1996 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 A0A096LPE4 126 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 A0A1W2PPZ6 126 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 MSGN1A6NI15 193 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 NSG1P42857 185 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 SULT1A1P50225 295 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 SULT1A2P50226 295 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 TAS2R31P59538 309 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 HHEXQ03014 270 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 IL10RBQ08334 325 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 UBE2V2Q15819 145 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 ASTLQ6HA08 431 aaPredicted RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 OR10K2Q6IF99 312 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 DOK3Q7L591 496 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 TMEM151AQ8N4L1 468 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 DEFB123Q8N688 67 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 ACOT4Q8N9L9 421 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 OR4C13Q8NGP0 309 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 OR1J2Q8NGS2 313 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 C2orf15Q8WU43 125 aaKnown RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 MOB3AQ96BX8 217 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 PHYHIPLQ96FC7 376 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 DEFB118Q96PH6 123 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 C1QTNF5Q9BXJ0 243 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 EXOSC3Q9NQT5 275 aaKnown RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 WIPI2Q9Y4P8 454 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 GAGE12JA6NER3 117 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 K7EPK0 472 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 GAGE7O76087 117 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 HLA-AP01891 365 aaKnown RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 GAGE12FP0CL80 117 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 GAGE12GP0CL81 117 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 GAGE12IP0CL82 117 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 C8orf88P0DMB2 117 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 TAS2R50P59544 299 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 RPS25P62851 125 aaKnown RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 ARG2P78540 354 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 RAB40BQ12829 278 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 GAGE4Q13068 117 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 CTU2Q2VPK5 515 aaKnown RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 LINC01559Q495D7 138 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 C6orf141Q5SZD1 244 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 CD276Q5ZPR3 534 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 GSG1LQ6UXU4 331 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 ZCCHC23Q6ZST2 131 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 FAM71E2Q8N5Q1 922 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 OR4K1Q8NGD4 311 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 IMP4Q96G21 291 aaKnown RBP6.86□□□□□ -1.31
USP48-203ENST00000374732 C16orf92Q96LL3 132 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 FAM173AQ9BQD7 235 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 TMED3Q9Y3Q3 217 aa6.86□□□□□ -1.31
USP48-203ENST00000374732 DOCK4Q8N1I0 1966 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 PRSS29PA6NIE9 313 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 SLC25A12O75746 678 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 IGLV3-27P01718 113 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 IGFBP2P18065 325 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 HIST1H1TP22492 207 aaPredicted RBP6.85□□□□□ -1.31
USP48-203ENST00000374732 ZNF79Q15937 498 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 IAH1Q2TAA2 248 aaPredicted RBP6.85□□□□□ -1.31
USP48-203ENST00000374732 MS4A18Q3C1V0 323 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 CLLU1OSQ5K130 101 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 TMEM69Q5SWH9 247 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 ZNF660Q6AZW8 331 aaPredicted RBP6.85□□□□□ -1.31
USP48-203ENST00000374732 CMC1Q7Z7K0 106 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 CALHM3Q86XJ0 350 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 LRRC25Q8N386 305 aaPredicted RBP6.85□□□□□ -1.31
USP48-203ENST00000374732 NEIL3Q8TAT5 605 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.85□□□□□ -1.31
USP48-203ENST00000374732 IRF7Q92985 503 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 ADTRPQ96IZ2 230 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 DDOQ99489 341 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 ATP5SQ99766 215 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 OR51J1Q9H342 316 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 RBM22Q9NW64 420 aaKnown RBP eCLIP6.85□□□□□ -1.312e-9■■■■■ 35.2
USP48-203ENST00000374732 BET1LQ9NYM9 111 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 NUP205Q92621 2012 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 LOC107984640A0A0U1RRK4 108 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 NKX2-8O15522 239 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 HLA-DQB2P05538 268 aa6.85□□□□□ -1.31
USP48-203ENST00000374732 ADRA2AP08913 450 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms