RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CHATP28329 748 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 CXCL12P48061 93 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 CCL20P78556 96 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 FAM3AP98173 230 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 WIPI1Q5MNZ9 446 aaPredicted RBP10.51□□□□□ -0.73
CLIP3-201ENST00000360535 LIAT1Q6ZQX7 453 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 LGI3Q8N145 548 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 NAT6Q93015 286 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF695Q8IW36 515 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 UBAC2Q8NBM4 344 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 TMEM54Q969K7 222 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 SYT3Q9BQG1 590 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 BCL2L14Q9BZR8 327 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 BCO1Q9HAY6 547 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 IGLV3-32A0A0A0MS00 114 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 IGHV3-64DA0A0J9YX35 117 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF587BE7ETH6 402 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 GPR137BO60478 399 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 RFPL3SP0C7P2 107 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 DSCR4P56555 118 aaPredicted RBP10.51□□□□□ -0.73
CLIP3-201ENST00000360535 PSG4Q00888 419 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 RUNX1Q01196 453 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 CXorf66Q5JRM2 361 aaPredicted RBP10.51□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF385CQ66K41 422 aaPredicted RBP10.51□□□□□ -0.73
CLIP3-201ENST00000360535 UBALD1Q8TB05 177 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 ABHD3Q8WU67 409 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF845Q96IR2 970 aaPredicted RBP10.51□□□□□ -0.73
CLIP3-201ENST00000360535 IL36RNQ9UBH0 155 aa10.51□□□□□ -0.73
CLIP3-201ENST00000360535 GAPDHP04406 335 aaKnown RBP10.5□□□□□ -0.73
CLIP3-201ENST00000360535 DANCRP0C864 163 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 TCN2P20062 427 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 RPS10P46783 165 aaKnown RBP10.5□□□□□ -0.73
CLIP3-201ENST00000360535 SULT1A1P50225 295 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 VAMP2P63027 116 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 C10orf128Q5T292 105 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 SKA3Q8IX90 412 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 CTSSP25774 331 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 ALDH3B1P43353 468 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 IGFBP7Q16270 282 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 IZUMO4Q1ZYL8 232 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 HLA-BQ31612 363 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 SOHLH1Q5JUK2 328 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 FAM27BQ5VT28 67 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 PRR18Q8N4B5 295 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF611Q8N823 705 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 C15orf54Q8N8G6 183 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 SUMF2Q8NBJ7 301 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 DNASE2BQ8WZ79 361 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 SLC7A10Q9NS82 523 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 TIMM10BQ9Y5J6 103 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 DOCK11Q5JSL3 2073 aa10.5□□□□□ -0.73
CLIP3-201ENST00000360535 DOCK10Q96BY6 2186 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 FAM157AC9JC47 383 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 IGLV3-1P01715 115 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 FABP1P07148 127 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 UMODP07911 640 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 EPHA8P29322 1005 aaPredicted RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 P2RY1P47900 373 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 EWSR1Q01844 656 aaKnown RBP eCLIP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 TLE1Q04724 770 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 TSC22D1Q15714 1073 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 RTL6Q6ICC9 239 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 SLC25A24Q6NUK1 477 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 IFI44Q8TCB0 444 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 SPSB1Q96BD6 273 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 HS3ST6Q96QI5 342 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 FOXB1Q99853 325 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 PROK2Q9HC23 129 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 HS3ST3B1Q9Y662 390 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 PATE3B3GLJ2 98 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 C9J4A7 227 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 WRBO00258 174 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 VAMP5O95183 116 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 PPYP01298 95 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 ECI1P42126 302 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 NKX2-1P43699 371 aaPredicted RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 RAB35Q15286 201 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 LYSMD4Q5XG99 296 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 MYPOPQ86VE0 399 aaPredicted RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 IGHV1-45A0A0A0MS14 117 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 C3orf85A0A1B0GTC6 90 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 ADAM20O43506 726 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 SYNGR3O43761 229 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 HEXAP06865 529 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 SCTP09683 121 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 SUCLG1P53597 346 aaKnown RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 MRPS34P82930 218 aaKnown RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 MRPL14Q6P1L8 145 aaKnown RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 RNASE11Q8TAA1 199 aaKnown RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 RNF138Q8WVD3 245 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 NTNG2Q96CW9 530 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 MSI2Q96DH6 328 aaKnown RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 UBE2ZQ9H832 354 aaPredicted RBP10.49□□□□□ -0.73
CLIP3-201ENST00000360535 STARD10Q9Y365 291 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 NBEAQ8NFP9 2946 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 GPR179Q6PRD1 2367 aa10.49□□□□□ -0.73
CLIP3-201ENST00000360535 MAP1BP46821 2468 aaKnown RBP10.48□□□□□ -0.73
CLIP3-201ENST00000360535 TRAV39A0A0B4J263 110 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 PQLC2LA1A4F0 135 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 MT-ND4LP03901 98 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms