RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 LYZL2Q7Z4W2 148 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 OR5T2Q8NGG2 359 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 SUCNR1Q9BXA5 334 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 NKX6-2Q9C056 277 aaPredicted RBP18.74■□□□□ 0.59
SHMT1-202ENST00000352886 CDX4O14627 284 aaPredicted RBP18.74■□□□□ 0.59
SHMT1-202ENST00000352886 NDUFA2O43678 99 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 LRP3O75074 770 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 ATG12O94817 140 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 MT-CO3P00414 261 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 AADACP22760 399 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 SRSF3P84103 164 aaKnown RBP18.74■□□□□ 0.59
SHMT1-202ENST00000352886 MST1LQ2TV78 715 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 APOBEC3DQ96AK3 386 aaPredicted RBP18.74■□□□□ 0.59
SHMT1-202ENST00000352886 MMP26Q9NRE1 261 aa18.74■□□□□ 0.59
SHMT1-202ENST00000352886 TNRC6AQ8NDV7 1962 aaKnown RBP18.74■□□□□ 0.59
SHMT1-202ENST00000352886 ZNF724A8MTY0 619 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 DNASE2O00115 360 aaPredicted RBP18.73■□□□□ 0.59
SHMT1-202ENST00000352886 COX5BP10606 129 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 HERV-K104P61576 105 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 RAB1AP62820 205 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 IGSF11Q5DX21 431 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 LIAT1Q6ZQX7 453 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 ZDHHC23Q8IYP9 409 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 Q8NFD4 153 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 EXTL1Q92935 676 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 SYT3Q9BQG1 590 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 FBXL17Q9UF56 701 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 M0R296 226 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 NGFP01138 241 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 MBPP02686 304 aaPredicted RBP18.73■□□□□ 0.59
SHMT1-202ENST00000352886 ADCYAP1P18509 176 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 PMELP40967 661 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 UCP3P55916 312 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 EIF5AL1Q6IS14 154 aaKnown RBP18.73■□□□□ 0.59
SHMT1-202ENST00000352886 DHRS13Q6UX07 377 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 OR4A4PQ8NGN8 299 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 GLYATL2Q8WU03 294 aa18.73■□□□□ 0.59
SHMT1-202ENST00000352886 TSNAXQ99598 290 aaKnown RBP18.73■□□□□ 0.59
SHMT1-202ENST00000352886 MEOX1P50221 254 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 TMEM33P57088 247 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 CEACAM21Q3KPI0 293 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 PLA2G2CQ5R387 149 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 LRTM2Q8N967 370 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 HS3ST6Q96QI5 342 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 SMIM3Q9BZL3 60 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 HRH4Q9H3N8 390 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 AMDHD2Q9Y303 409 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 FAM74A7A6NL05 159 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 NUDT19A8MXV4 375 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 CST4P01036 141 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 PPYP01298 95 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 SP1P08047 785 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 FAM74A3Q4VXF1 159 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 NUFIP2Q7Z417 695 aaKnown RBP18.72■□□□□ 0.59
SHMT1-202ENST00000352886 MSI2Q96DH6 328 aaKnown RBP18.72■□□□□ 0.59
SHMT1-202ENST00000352886 SMIM8Q96KF7 97 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 C18orf12Q96KH6 178 aa18.72■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A10PA6NDY2 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A18PA6NE21 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A16PA6NEW6 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A20PA6NIJ5 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A8PA6NJQ4 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A7PA6NKC0 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A22PA8MWA6 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A12PA8MX19 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A5PA8MXJ8 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A23PA8MXZ1 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 ZNF732B4DXR9 585 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 GPR31O00270 319 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 PHF1O43189 567 aaPredicted RBP18.71■□□□□ 0.59
SHMT1-202ENST00000352886 DIRAS3O95661 229 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A15PP0C7V4 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A13PP0C7W8 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A14PP0C7W9 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FAM90A24PP0C7X0 464 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 MCEMP1Q8IX19 187 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 SAT2Q96F10 170 aaPredicted RBP18.71■□□□□ 0.59
SHMT1-202ENST00000352886 POM121Q96HA1 1249 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 RSRP1Q9BUV0 290 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 TMEM231Q9H6L2 316 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 RNF122Q9H9V4 155 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FBXO24O75426 580 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 ARR3P36575 388 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 FGF12P61328 243 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 TMEM268Q5VZI3 342 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 LGI3Q8N145 548 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 POM121L2Q96KW2 1035 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 ZNF552Q9H707 407 aaPredicted RBP18.71■□□□□ 0.59
SHMT1-202ENST00000352886 IL36RNQ9UBH0 155 aa18.71■□□□□ 0.59
SHMT1-202ENST00000352886 H7C1Q1 480 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 MED6O75586 246 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 TNFSF15O95150 251 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 NME2P22392 152 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 PJVKQ0ZLH3 352 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 RNPS1Q15287 305 aaKnown RBP18.7■□□□□ 0.58
SHMT1-202ENST00000352886 IL34Q6ZMJ4 242 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 CCDC71LQ8N9Z2 235 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 PLEKHA2Q9HB19 425 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 MTCH1Q9NZJ7 389 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 KLF13Q9Y2Y9 288 aaPredicted RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms