RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SSSCA1O60232 199 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 DFFBO76075 338 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 GCGP01275 180 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 FAHP16930 419 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 GZMHP20718 246 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 KIR2DL1P43626 348 aaPredicted RBP5.9□□□□□ -1.47
VPS39-202ENST00000348544 OR1D4P47884 311 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 DCAF7P61962 342 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 PPA1Q15181 289 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 PRSS8Q16651 343 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 TMEM196Q5HYL7 178 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 CXorf66Q5JRM2 361 aaPredicted RBP5.9□□□□□ -1.47
VPS39-202ENST00000348544 COL13A1Q5TAT6 717 aaPredicted RBP5.9□□□□□ -1.47
VPS39-202ENST00000348544 SLC25A26Q70HW3 274 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 CMTM1Q8IZ96 169 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 MAML2Q8IZL2 1156 aaPredicted RBP5.9□□□□□ -1.47
VPS39-202ENST00000348544 TMEM217Q8N7C4 229 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 R3HDM4Q96D70 268 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 HIST1H2AAQ96QV6 131 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 TPSD1Q9BZJ3 242 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 PLA2G2FQ9BZM2 168 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 ZNF665Q9H7R5 613 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 SRD5A3Q9H8P0 318 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 LYRM2Q9NU23 88 aaPredicted RBP5.9□□□□□ -1.47
VPS39-202ENST00000348544 NECAP2Q9NVZ3 263 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 RP1P56715 2156 aa5.9□□□□□ -1.47
VPS39-202ENST00000348544 CHD9Q3L8U1 2897 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 CCDC163A0A0D9SF12 145 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 MBP02144 154 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 OPN1MWP04001 364 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 TK1P04183 234 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 APODP05090 189 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 MMP7P09237 267 aaPredicted RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 NPSP0C0P6 89 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 OPN1MW2P0DN77 364 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 OPN1MW3P0DN78 364 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 CTSEP14091 401 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 GABREP78334 506 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 PAX5Q02548 391 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 PNRC1Q12796 327 aaPredicted RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 SMAD4Q13485 552 aaKnown RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 ARL6IP1Q15041 203 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 MPV17LQ2QL34 196 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 BRICD5Q6PL45 260 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 Q6ZPA2 131 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 C20orf196Q8IYI0 205 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 ZNF283Q8N7M2 679 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 PLEKHF2Q9H8W4 249 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 SERINC1Q9NRX5 453 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 GAB2Q9UQC2 676 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 C2orf16Q68DN1 1984 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 RANBP2P49792 3224 aaKnown RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 IGKV3D-11A0A0A0MRZ8 115 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 TRAV1-1A0A0B4J248 108 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 ZFP92A6NM28 416 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 A6NNC1 897 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 TNFRSF10CO14798 259 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 HSPA12AO43301 675 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 KLF8O95600 359 aaPredicted RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 IGLV3-1P01715 115 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 PFN1P07737 140 aaKnown RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 CEACAM1P13688 526 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 RAB4AP20338 218 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 NKX2-1P43699 371 aaPredicted RBP5.89□□□□□ -1.47
VPS39-202ENST00000348544 PDLIM4P50479 330 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 LBX1P52954 281 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 HHEXQ03014 270 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 TLE4Q04727 773 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 ZNF154Q13106 437 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 CLN3Q13286 438 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 C9orf50Q5SZB4 431 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 ARMC6Q6NXE6 501 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 SSX7Q7RTT5 188 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 SPOCK3Q9BQ16 436 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 PYGO2Q9BRQ0 406 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 TMEM208Q9BTX3 173 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 WWTR1Q9GZV5 400 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 NKX2-4Q9H2Z4 354 aa5.89□□□□□ -1.47
VPS39-202ENST00000348544 A0A1W2PQF6 199 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 LIPT2A6NK58 231 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 TRDCB7Z8K6 153 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 H3BML4 177 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 M0R143 59 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 ANGPTL7O43827 346 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 EFNA2O43921 213 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 NXPH3O95157 252 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 CDS2O95674 445 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 HBE1P02100 147 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 BCL2P10415 239 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 HNRNPA2B1P22626 353 aaKnown RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 ZNF133P52736 654 aaPredicted RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 ZNF726P1Q15940 193 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 CARD17Q5XLA6 110 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 RTL6Q6ICC9 239 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 C16orf47Q6ZP98 133 aaPredicted RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 ZNF100Q8IYN0 542 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 SLC22A18ASQ8N1D0 253 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 NECAP1Q8NC96 275 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 OR10J5Q8NHC4 309 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms