RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TMEM218A2RU14 115 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 SP1P08047 785 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 MRPL21Q7Z2W9 205 aaKnown RBP16.66■□□□□ 0.26
COL9A3-201ENST00000343916 LDLRAD3Q86YD5 345 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 CBLN2Q8IUK8 224 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 OR51B6Q9H340 312 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 ZNF286AQ9HBT8 521 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 MEMO1Q9Y316 297 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 STARD10Q9Y365 291 aa16.66■□□□□ 0.26
COL9A3-201ENST00000343916 SCGB1D2O95969 90 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 FUT3P21217 361 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 SRSF3P84103 164 aaKnown RBP16.65■□□□□ 0.26
COL9A3-201ENST00000343916 NAAAQ02083 359 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 OR5L1Q8NGL2 311 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 TECTBQ96PL2 329 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 SLC2A9Q9NRM0 540 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 PQLC2LA1A4F0 135 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 HSPB6O14558 160 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 FGF16O43320 207 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 HKR1P10072 659 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 AKR1D1P51857 326 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 IGSF11Q5DX21 431 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-201ENST00000343916 CNTNAP3BQ96NU0 1288 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 CNTNAP3Q9BZ76 1288 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 DEFB127Q9H1M4 99 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 ZNF552Q9H707 407 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-201ENST00000343916 PRSS50Q9UI38 385 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 LSM5Q9Y4Y9 91 aaKnown RBP16.65■□□□□ 0.26
COL9A3-201ENST00000343916 CFAP47Q6ZTR5 3102 aa16.65■□□□□ 0.26
COL9A3-201ENST00000343916 H7C2Y5 167 aa16.64■□□□□ 0.26
COL9A3-201ENST00000343916 ACTL6AO96019 429 aa16.64■□□□□ 0.26
COL9A3-201ENST00000343916 F12P00748 615 aaPredicted RBP16.64■□□□□ 0.26
COL9A3-201ENST00000343916 RPL35P42766 123 aaKnown RBP16.64■□□□□ 0.26
COL9A3-201ENST00000343916 RPL7L1Q6DKI1 246 aaKnown RBP16.64■□□□□ 0.26
COL9A3-201ENST00000343916 HAGHLQ6PII5 290 aaPredicted RBP16.64■□□□□ 0.26
COL9A3-201ENST00000343916 NAA60Q9H7X0 242 aa16.64■□□□□ 0.26
COL9A3-201ENST00000343916 ATPIF1Q9UII2 106 aa16.64■□□□□ 0.26
COL9A3-201ENST00000343916 C3orf80F5H4A9 247 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 RCC1P18754 421 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-201ENST00000343916 TGIF1Q15583 401 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 SHEQ5VZ18 495 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 VASH2Q86V25 355 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 TMEM231Q9H6L2 316 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 MLXQ9UH92 298 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 LHX6Q9UPM6 363 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 KCNIP3Q9Y2W7 256 aa16.64■□□□□ 0.25
COL9A3-201ENST00000343916 NME2P1O60361 137 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 IFNA21P01568 189 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 NME2P22392 152 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 NOVA1P51513 510 aaKnown RBP16.63■□□□□ 0.25
COL9A3-201ENST00000343916 TMEM187Q14656 261 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 HIKESHIQ53FT3 197 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 UQCC3Q6UW78 93 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 LYZL2Q7Z4W2 148 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 MCEMP1Q8IX19 187 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 RNF141Q8WVD5 230 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 APOBEC3DQ96AK3 386 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-201ENST00000343916 LOXL4Q96JB6 756 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 DNAJB11Q9UBS4 358 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 ZNF724A8MTY0 619 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 LILRA1O75019 489 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 FAM157CP0CG43 387 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 AADACP22760 399 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 DUSP1P28562 367 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 HFEQ30201 348 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 CLEC9AQ6UXN8 241 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 SVBPQ8N300 66 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 MDS2Q8NDY4 140 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 EXTL1Q92935 676 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 POM121L2Q96KW2 1035 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 TMEM100Q9NV29 134 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 MTCH1Q9NZJ7 389 aa16.63■□□□□ 0.25
COL9A3-201ENST00000343916 RAB19A4D1S5 217 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 ZNF732B4DXR9 585 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 DEDDO75618 318 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 ZDHHC23Q8IYP9 409 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 TUBD1Q9UJT1 453 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 KLF13Q9Y2Y9 288 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-201ENST00000343916 F8W036 122 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 BLOC1S1P78537 153 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 RNFT1Q5M7Z0 435 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 TMEM211Q6ICI0 200 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 MOB3AQ96BX8 217 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 SMIM3Q9BZL3 60 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 NDRG3Q9UGV2 375 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 ARHGAP21Q5T5U3 1957 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 CACNA1HO95180 2353 aa16.62■□□□□ 0.25
COL9A3-201ENST00000343916 SPENQ96T58 3664 aaKnown RBP16.62■□□□□ 0.25
COL9A3-201ENST00000343916 ZFHX4Q86UP3 3567 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 ARGFXA6NJG6 315 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 ZNF705EA8MWA4 302 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-201ENST00000343916 KLRC4-KLRK1H3BQV0 150 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 K7EPK0 472 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 LRP3O75074 770 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 DIRAS3O95661 229 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 RPL12P30050 165 aaKnown RBP16.61■□□□□ 0.25
COL9A3-201ENST00000343916 SLC10A1Q14973 349 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 STK11Q15831 433 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 IGFBP7Q16270 282 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms