RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 H3F3CQ6NXT2 135 aa8.79□□□□□ -1
USP54-201ENST00000339859 VSTM2AQ8TAG5 236 aa8.79□□□□□ -1
USP54-201ENST00000339859 SUCNR1Q9BXA5 334 aa8.79□□□□□ -1
USP54-201ENST00000339859 PIPOXQ9P0Z9 390 aa8.79□□□□□ -1
USP54-201ENST00000339859 CEP290O15078 2479 aa8.79□□□□□ -1
USP54-201ENST00000339859 YIF1AO95070 293 aa8.79□□□□□ -1
USP54-201ENST00000339859 CECR9P0C854 216 aa8.79□□□□□ -1
USP54-201ENST00000339859 OMGP23515 440 aa8.79□□□□□ -1
USP54-201ENST00000339859 MMP15P51511 669 aa8.79□□□□□ -1
USP54-201ENST00000339859 ROM1Q03395 351 aa8.79□□□□□ -1
USP54-201ENST00000339859 RHEBQ15382 184 aa8.79□□□□□ -1
USP54-201ENST00000339859 ETFRF1Q6IPR1 90 aa8.79□□□□□ -1
USP54-201ENST00000339859 ZNF561Q8N587 486 aa8.79□□□□□ -1
USP54-201ENST00000339859 DEDD2Q8WXF8 326 aa8.79□□□□□ -1
USP54-201ENST00000339859 SNX22Q96L94 193 aa8.79□□□□□ -1
USP54-201ENST00000339859 IGHV2OR16-5A0A0B4J2B6 119 aa8.79□□□□□ -1
USP54-201ENST00000339859 MEIOCA2RUB1 952 aa8.79□□□□□ -1
USP54-201ENST00000339859 C17orf51A8MQB3 221 aa8.79□□□□□ -1
USP54-201ENST00000339859 MGST3O14880 152 aa8.79□□□□□ -1
USP54-201ENST00000339859 FCGR3BO75015 233 aa8.79□□□□□ -1
USP54-201ENST00000339859 CRYBB2P43320 205 aa8.79□□□□□ -1
USP54-201ENST00000339859 LSM11P83369 360 aaKnown RBP eCLIP8.79□□□□□ -1
USP54-201ENST00000339859 ZNF266Q14584 549 aa8.79□□□□□ -1
USP54-201ENST00000339859 FAM74A1Q5RGS3 127 aa8.79□□□□□ -1
USP54-201ENST00000339859 FNDC7Q5VTL7 733 aa8.79□□□□□ -1
USP54-201ENST00000339859 OR8U1Q8NH10 309 aa8.79□□□□□ -1
USP54-201ENST00000339859 NEIL1Q96FI4 390 aaPredicted RBP8.79□□□□□ -1
USP54-201ENST00000339859 UHRF2Q96PU4 802 aa8.79□□□□□ -1
USP54-201ENST00000339859 A0A0D9SG52 128 aa8.79□□□□□ -1
USP54-201ENST00000339859 GEMIN2O14893 280 aaKnown RBP8.79□□□□□ -1
USP54-201ENST00000339859 CTAG2O75638 210 aa8.79□□□□□ -1
USP54-201ENST00000339859 CYB5R3P00387 301 aaPredicted RBP8.79□□□□□ -1
USP54-201ENST00000339859 DYRK1AQ13627 763 aa8.79□□□□□ -1
USP54-201ENST00000339859 RFPL4BQ6ZWI9 263 aa8.79□□□□□ -1
USP54-201ENST00000339859 RPL36A-HNRNPH2H7BZ11 118 aa8.79□□□□□ -1
USP54-201ENST00000339859 TSPAN4O14817 238 aa8.79□□□□□ -1
USP54-201ENST00000339859 SSTR2P30874 369 aa8.79□□□□□ -1
USP54-201ENST00000339859 RPS27AP62979 156 aaKnown RBP8.79□□□□□ -1
USP54-201ENST00000339859 HNF4GQ14541 408 aa8.79□□□□□ -1
USP54-201ENST00000339859 THYN1Q9P016 225 aa8.79□□□□□ -1
USP54-201ENST00000339859 ZNHIT1O43257 154 aa8.78□□□□□ -1
USP54-201ENST00000339859 B3GALNT1O75752 331 aa8.78□□□□□ -1
USP54-201ENST00000339859 BPIFB3P59826 476 aa8.78□□□□□ -1
USP54-201ENST00000339859 SORDQ00796 357 aa8.78□□□□□ -1
USP54-201ENST00000339859 DTX1Q86Y01 620 aa8.78□□□□□ -1
USP54-201ENST00000339859 OR4S2Q8NH73 311 aa8.78□□□□□ -1
USP54-201ENST00000339859 DPF1Q92782 380 aa8.78□□□□□ -1
USP54-201ENST00000339859 TMEM230Q96A57 120 aa8.78□□□□□ -1
USP54-201ENST00000339859 PINX1Q96BK5 328 aaKnown RBP8.78□□□□□ -1
USP54-201ENST00000339859 RBMXL1Q96E39 390 aaKnown RBP8.78□□□□□ -1
USP54-201ENST00000339859 CITED4Q96RK1 184 aa8.78□□□□□ -1
USP54-201ENST00000339859 K7EQM0 130 aa8.78□□□□□ -1
USP54-201ENST00000339859 ST8SIA3O43173 380 aa8.78□□□□□ -1
USP54-201ENST00000339859 CLPSP04118 112 aa8.78□□□□□ -1
USP54-201ENST00000339859 CD3DP04234 171 aa8.78□□□□□ -1
USP54-201ENST00000339859 LGALS7P47929 136 aa8.78□□□□□ -1
USP54-201ENST00000339859 TAS2R30P59541 319 aa8.78□□□□□ -1
USP54-201ENST00000339859 BLOC1S1P78537 153 aa8.78□□□□□ -1
USP54-201ENST00000339859 TGIF2LYQ8IUE0 185 aa8.78□□□□□ -1
USP54-201ENST00000339859 TGIF2LXQ8IUE1 241 aa8.78□□□□□ -1
USP54-201ENST00000339859 SAXO1Q8IYX7 474 aa8.78□□□□□ -1
USP54-201ENST00000339859 OR4S1Q8NGB4 309 aa8.78□□□□□ -1
USP54-201ENST00000339859 MAP6Q96JE9 813 aa8.78□□□□□ -1
USP54-201ENST00000339859 ZDHHC11Q9H8X9 412 aa8.78□□□□□ -1
USP54-201ENST00000339859 STRAPQ9Y3F4 350 aaKnown RBP8.78□□□□□ -1
USP54-201ENST00000339859 INSIG2Q9Y5U4 225 aa8.78□□□□□ -1
USP54-201ENST00000339859 TSPAN15O95858 294 aa8.78□□□□□ -1
USP54-201ENST00000339859 IGHG3P01860 377 aa8.78□□□□□ -1
USP54-201ENST00000339859 S100PP25815 95 aa8.78□□□□□ -1
USP54-201ENST00000339859 HLA-DRB3P79483 266 aa8.78□□□□□ -1
USP54-201ENST00000339859 Q56UQ5 140 aa8.78□□□□□ -1
USP54-201ENST00000339859 C20orf204Q6ZNR8 217 aa8.78□□□□□ -1
USP54-201ENST00000339859 RTN4IP1Q8WWV3 396 aaPredicted RBP8.78□□□□□ -1
USP54-201ENST00000339859 UBA52P62987 128 aaKnown RBP8.78□□□□□ -1
USP54-201ENST00000339859 LINC00114Q6XXX2 140 aa8.78□□□□□ -1
USP54-201ENST00000339859 WFDC6Q9BQY6 131 aa8.78□□□□□ -1
USP54-201ENST00000339859 C11orf54Q9H0W9 315 aaPredicted RBP8.78□□□□□ -1
USP54-201ENST00000339859 PIKFYVEQ9Y2I7 2098 aa8.78□□□□□ -1
USP54-201ENST00000339859 ZG16O60844 167 aa8.78□□□□□ -1
USP54-201ENST00000339859 ISG15P05161 165 aa8.78□□□□□ -1
USP54-201ENST00000339859 KIR3DL2P43630 455 aa8.78□□□□□ -1
USP54-201ENST00000339859 RBM11P57052 281 aaKnown RBP8.78□□□□□ -1
USP54-201ENST00000339859 TLE4Q04727 773 aa8.78□□□□□ -1
USP54-201ENST00000339859 OR10Z1Q8NGY1 313 aa8.78□□□□□ -1
USP54-201ENST00000339859 DYNC2LI1Q8TCX1 351 aa8.78□□□□□ -1
USP54-201ENST00000339859 OR8G2PQ6IF36 304 aa8.77□□□□□ -1
USP54-201ENST00000339859 ADAT3Q96EY9 351 aaPredicted RBP8.77□□□□□ -1
USP54-201ENST00000339859 MRPL22Q9NWU5 206 aaKnown RBP8.77□□□□□ -1
USP54-201ENST00000339859 AK3Q9UIJ7 227 aa8.77□□□□□ -1
USP54-201ENST00000339859 KIF26AQ9ULI4 1882 aaPredicted RBP8.77□□□□□ -1.01
USP54-201ENST00000339859 FGF12P61328 243 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 BTG1P62324 171 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 SNAI3Q3KNW1 292 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 ZNF546Q86UE3 836 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 OR14K1Q8NGZ2 314 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 TERB2Q8NHR7 220 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 PLSCR4Q9NRQ2 329 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 SLC35D1Q9NTN3 355 aa8.77□□□□□ -1.01
USP54-201ENST00000339859 ZNF230Q9UIE0 474 aaPredicted RBP8.77□□□□□ -1.01
USP54-201ENST00000339859 TRBV23-1A0A0A0MS06 115 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms