RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ADIPOQQ15848 244 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 ALKBH6Q3KRA9 238 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 C17orf99Q6UX52 265 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 ADTRPQ96IZ2 230 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 MIEN1Q9BRT3 115 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 AMDHD2Q9Y303 409 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 A0A0B4J2E0 115 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 A0A1B0GX12 115 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 FXYD1O00168 92 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 IER3P46695 156 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 NUBPLQ8TB37 319 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 NT5CQ8TCD5 201 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 ZNF107Q9UII5 783 aaPredicted RBP12.35□□□□□ -0.43
CSPG4-201ENST00000308508 ASB1Q9Y576 335 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 NPTNQ9Y639 398 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 SIAH2O43255 324 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 SRSF10O75494 262 aaKnown RBP12.35□□□□□ -0.43
CSPG4-201ENST00000308508 GCGP01275 180 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 CST9Q5W186 159 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 FOXB1Q99853 325 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 FGF22Q9HCT0 170 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 ETHE1O95571 254 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 HOXA6P31267 233 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 SRP14P37108 136 aaKnown RBP12.35□□□□□ -0.43
CSPG4-201ENST00000308508 OR3A4PP47883 348 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 LBX1P52954 281 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 ZNF880Q6PDB4 577 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 DAOP14920 347 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 NMUP48645 174 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 ZNF707Q96C28 371 aaPredicted RBP12.35□□□□□ -0.43
CSPG4-201ENST00000308508 OR6C3Q9NZP0 311 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 ANXA10Q9UJ72 324 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 SNRNP200O75643 2136 aaKnown RBP12.34□□□□□ -0.43
CSPG4-201ENST00000308508 M0R296 226 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 CRHP06850 196 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 ZGLP1P0C6A0 271 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 CAPZBP47756 277 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 FOXF1Q12946 379 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 OTPQ5XKR4 325 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 TBC1D26Q86UD7 250 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 TMEM204Q9BSN7 226 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 PSG5Q15238 335 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 CARFQ8N187 725 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 DTD1Q8TEA8 209 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 OR2J1Q9GZK6 312 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 SPRY3O43610 288 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 ZXDAP98168 799 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 VSTM2AQ8TAG5 236 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 PARD6GQ9BYG4 376 aaPredicted RBP12.34□□□□□ -0.43
CSPG4-201ENST00000308508 CDC42EP3Q9UKI2 254 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 DNPH1O43598 174 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 FOXO1Q12778 655 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 MYBPHQ13203 477 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 SPINK9Q5DT21 86 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 DMRTC1Q5HYR2 192 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 TMEM140Q9NV12 185 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 ZNF345Q14585 488 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 RNPS1Q15287 305 aaKnown RBP12.34□□□□□ -0.43
CSPG4-201ENST00000308508 OR4C3Q8NH37 302 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 SPPL3Q8TCT6 385 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 FGF14Q92915 247 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 CNTD2Q9H8S5 307 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 PDFQ9HBH1 243 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 SCN8AQ9UQD0 1980 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 POLR2GP62487 172 aaKnown RBP eCLIP12.34□□□□□ -0.43
CSPG4-201ENST00000308508 MRPL54Q6P161 138 aaKnown RBP12.34□□□□□ -0.43
CSPG4-201ENST00000308508 MMP25Q9NPA2 562 aa12.34□□□□□ -0.43
CSPG4-201ENST00000308508 ZNF275Q9NSD4 429 aaPredicted RBP12.34□□□□□ -0.43
CSPG4-201ENST00000308508 DEFB108AA8MXU0 73 aa12.33□□□□□ -0.43
CSPG4-201ENST00000308508 FBXO46Q6PJ61 603 aaPredicted RBP12.33□□□□□ -0.43
CSPG4-201ENST00000308508 KMT5CQ86Y97 462 aa12.33□□□□□ -0.43
CSPG4-201ENST00000308508 RAB33BQ9H082 229 aa12.33□□□□□ -0.43
CSPG4-201ENST00000308508 TMEM38BQ9NVV0 291 aa12.33□□□□□ -0.43
CSPG4-201ENST00000308508 KIF13BQ9NQT8 1826 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 SYNGR2O43760 224 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 ST6GAL1P15907 406 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 C19orf57Q0VDD7 668 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 CD300LDQ6UXZ3 194 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 SPACA9Q96E40 222 aaPredicted RBP12.33□□□□□ -0.44
CSPG4-201ENST00000308508 C4orf45Q96LM5 186 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 ABHD1Q96SE0 405 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 TNFRSF12AQ9NP84 129 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 ACTL6AO96019 429 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 WDFY1Q8IWB7 410 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 NPEPL1Q8NDH3 523 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 STXBP6Q8NFX7 210 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 OR5M9Q8NGP3 310 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 STARD10Q9Y365 291 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 TRDCB7Z8K6 153 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 PCMT1P22061 227 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 SPATA45Q537H7 98 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 NEU3Q9UQ49 428 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF788Q6ZQV5 615 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 SLC25A42Q86VD7 318 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 C8orf44Q96CB5 159 aa12.33□□□□□ -0.44
CSPG4-201ENST00000308508 LINC00615Q96LM1 132 aaPredicted RBP12.33□□□□□ -0.44
CSPG4-201ENST00000308508 ABLIM3O94929 683 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 CD82P27701 267 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 OR4P4Q8NGL7 312 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 OR13G1Q8NGZ3 307 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms