RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SLC23A3Q6PIS1 610 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 ABHD14BQ96IU4 210 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 C10orf90Q96M02 699 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 PSG6Q00889 435 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 PAX5Q02548 391 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 FAM201AQ5SY85 155 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 MYPOPQ86VE0 399 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 ALS2Q96Q42 1657 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 HOXA4Q00056 320 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF841Q6ZN19 808 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 NUFIP2Q7Z417 695 aaKnown RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 ABHD17AQ96GS6 310 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 PCED1AQ9H1Q7 454 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF701M0R085 212 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 KLK8O60259 260 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 CYC1P08574 325 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 SUMO3P55854 103 aaPredicted RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 DGAT2L7PQ6IED9 249 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 RNASEKQ6P5S7 137 aaKnown RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF207O43670 478 aaKnown RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 FCARP24071 287 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 CNN1P51911 297 aaKnown RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 NSUN5P1Q3KNT7 163 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 TIGITQ495A1 244 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 GABARAPL1Q9H0R8 117 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 G3V3Q6 166 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 CPN1P15169 458 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 RAC3P60763 192 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 TBC1D26Q86UD7 250 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 ITPKCQ96DU7 683 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 CYSLTR2Q9NS75 346 aa6.85□□□□□ -1.31
SCN9A-201ENST00000303354 RBFOX1Q9NWB1 397 aaKnown RBP6.85□□□□□ -1.31
SCN9A-201ENST00000303354 MYH7BA7E2Y1 1941 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 A0A0J9YW62 118 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 A0A1W2PPQ1 181 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 TFAP2AP05549 437 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 COX5AP20674 150 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 RAB5CP51148 216 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 PPP1R1CQ8WVI7 109 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 GRAMD2BQ96HH9 432 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 DPH3P1Q9H4G8 78 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 NHSQ6T4R5 1651 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 C20orf202A1L168 122 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 PNPP00491 289 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 SCGB1C2P0DMR2 95 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 SKA3Q8IX90 412 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 R3HDM4Q96D70 268 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 PAPPAQ13219 1627 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 ANKRD36CQ5JPF3 1778 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 POLR2GP62487 172 aaKnown RBP eCLIP6.84□□□□□ -1.31
SCN9A-201ENST00000303354 DHODHQ02127 395 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 CCL28Q9NRJ3 127 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 KPTNQ9Y664 436 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 A0A1W2PPV9 198 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 XKRY2A2RUG3 117 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 H3BTX0 84 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 HRASP01112 189 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 IGKV1D-16P01601 117 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 VSIG10L2P0DP72 767 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 PPP1CCP36873 323 aaKnown RBP6.84□□□□□ -1.31
SCN9A-201ENST00000303354 MARC2Q969Z3 335 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF501Q96CX3 271 aaPredicted RBP6.84□□□□□ -1.31
SCN9A-201ENST00000303354 WASHC3Q9Y3C0 194 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 GABRB1P18505 474 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 BMI1P35226 326 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 SLC16A12Q6ZSM3 486 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 C2orf50Q96LR7 162 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 HARBI1Q96MB7 349 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 SIGLEC12Q96PQ1 595 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 SMIM7Q9BQ49 75 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 MS4A5Q9H3V2 200 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 SEBOXQ9HB31 216 aaPredicted RBP6.84□□□□□ -1.31
SCN9A-201ENST00000303354 RYDENQ9NUL5 291 aaKnown RBP6.84□□□□□ -1.31
SCN9A-201ENST00000303354 KCNE1BA0A087WTH5 132 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 CELA3AP09093 270 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 FPR2P25090 351 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 PMELP40967 661 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 OR10Z1Q8NGY1 313 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 OR2H1Q9GZK4 316 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 GPR27Q9NS67 375 aa6.84□□□□□ -1.31
SCN9A-201ENST00000303354 FOXS1O43638 330 aa6.84□□□□□ -1.32
SCN9A-201ENST00000303354 ZNF721Q8TF20 911 aa6.84□□□□□ -1.32
SCN9A-201ENST00000303354 PIGMQ9H3S5 423 aa6.84□□□□□ -1.32
SCN9A-201ENST00000303354 BCL2L10Q9HD36 194 aa6.84□□□□□ -1.32
SCN9A-201ENST00000303354 ZDHHC8Q9ULC8 765 aa6.84□□□□□ -1.32
SCN9A-201ENST00000303354 FOXJ3Q9UPW0 622 aa6.84□□□□□ -1.32
SCN9A-201ENST00000303354 LOC102724200A0A096LPH7 203 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-201ENST00000303354 DYNLT3P51808 116 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 ZNF658BQ4V348 819 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-201ENST00000303354 KCTD12Q96CX2 325 aaKnown RBP6.83□□□□□ -1.32
SCN9A-201ENST00000303354 TUBA4BQ9H853 241 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 STARD10Q9Y365 291 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 IGHV3OR16-8A0A075B7F1 116 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 LIPT2A6NK58 231 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 PSMB6P28072 239 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 ERVS71-1P61550 626 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 KLRB1Q12918 225 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 SLC2A9Q9NRM0 540 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 CXorf51AA0A1B0GTR3 108 aa6.83□□□□□ -1.32
SCN9A-201ENST00000303354 TMEM262E9PQX1 116 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms