RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ARL11Q969Q4 196 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 DPCDQ9BVM2 203 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 HINT2Q9BX68 163 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 WDR13Q9H1Z4 485 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 AK3Q9UIJ7 227 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 ANXA10Q9UJ72 324 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 PRELID3BQ9Y3B1 194 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 SPTBN1Q01082 2364 aaKnown RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 ATXN7O15265 892 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 ACTL6BO94805 426 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 IL18BPO95998 194 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 LY6DQ14210 128 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 BEX5Q5H9J7 111 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 OR51H1Q8NH63 302 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 EDARADDQ8WWZ3 215 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF488Q96MN9 340 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF436Q9C0F3 470 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 TUBD1Q9UJT1 453 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 TRGV10A0A0A0MS01 117 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 TEX46H3BTG2 121 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 CA11O75493 328 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 HAND1O96004 215 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 GLI4P10075 376 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 FPR2P25090 351 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 CAV2P51636 162 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 SORDQ00796 357 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 IAH1Q2TAA2 248 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 SAXO1Q8IYX7 474 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 RTN4IP1Q8WWV3 396 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 STARD4Q96DR4 205 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 RAB1BQ9H0U4 201 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 TRANK1O15050 2925 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 NDUFB3O43676 98 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 ALX3O95076 343 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 SIX6O95475 246 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 CELA3BP08861 270 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 MOGAT2Q3SYC2 334 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF546Q86UE3 836 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 OR2AK2Q8NG84 335 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 PIK3IP1Q96FE7 263 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF486Q96H40 463 aaPredicted RBP9.97□□□□□ -0.81
VPS4A-201ENST00000254950 CEACAM4O75871 244 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 ALDH3B1P43353 468 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF260Q3ZCT1 412 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 TMEM128Q5BJH2 165 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 LRRC10Q5BKY1 277 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 LYG2Q86SG7 212 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 FAM185AQ8N0U4 392 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 SCCPDHQ8NBX0 429 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 UPRTQ96BW1 309 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 DIRC2Q96SL1 478 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 PNRC2Q9NPJ4 139 aaKnown RBP9.97□□□□□ -0.81
VPS4A-201ENST00000254950 TRAV38-1A0A0B4J264 116 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 IGHV2OR16-5A0A0B4J2B6 119 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 SYNGR1O43759 233 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 PIGPP57054 158 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 KRBOX4Q5JUW0 171 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 DOLPP1Q86YN1 238 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 SLC7A5P1Q8MH63 180 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 ZBTB8BQ8NAP8 495 aaPredicted RBP9.97□□□□□ -0.81
VPS4A-201ENST00000254950 OR5D13Q8NGL4 314 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 FER1L5A0AVI2 2057 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 TOR1AO14656 332 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 GIPP09681 153 aaPredicted RBP9.97□□□□□ -0.81
VPS4A-201ENST00000254950 HIST1H3AP68431 136 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 HIST2H3PS2Q5TEC6 136 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 GLDNQ6ZMI3 551 aaPredicted RBP9.97□□□□□ -0.81
VPS4A-201ENST00000254950 HIST2H3AQ71DI3 136 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 DRAXINQ8NBI3 349 aaPredicted RBP9.97□□□□□ -0.81
VPS4A-201ENST00000254950 UBALD1Q8TB05 177 aa9.97□□□□□ -0.81
VPS4A-201ENST00000254950 FYTTD1Q96QD9 318 aaKnown RBP9.97□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A10PA6NDY2 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A18PA6NE21 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A16PA6NEW6 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A20PA6NIJ5 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A8PA6NJQ4 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A7PA6NKC0 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A22PA8MWA6 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A12PA8MX19 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A5PA8MXJ8 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A23PA8MXZ1 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 TM4SF5O14894 197 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A15PP0C7V4 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A13PP0C7W8 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A14PP0C7W9 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 FAM90A24PP0C7X0 464 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 IL3RAP26951 378 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 UBE2MP61081 183 aaKnown RBP9.96□□□□□ -0.81
VPS4A-201ENST00000254950 TRAT1Q6PIZ9 186 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 LYZL4Q96KX0 146 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 OR2V2Q96R30 315 aa9.96□□□□□ -0.81
VPS4A-201ENST00000254950 CD40P25942 277 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 KCNJ3P48549 501 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 C17orf107Q6ZR85 190 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 TMEM200AQ86VY9 491 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 ZGRF1Q86YA3 2104 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 RNF115Q9Y4L5 304 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 EML5Q05BV3 1969 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 CCSO14618 274 aa9.96□□□□□ -0.82
VPS4A-201ENST00000254950 OTX1P32242 354 aaPredicted RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms