RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 WNT5BQ9H1J7 359 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 V9GYS6 101 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 BAXQ07812 192 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 OPCMLQ14982 345 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 Q6ZRG5 221 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 DUSP18Q8NEJ0 188 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 A6NIN4 97 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 APOBEC3AP31941 199 aaPredicted RBP11.88□□□□□ -0.51
LDLR-201ENST00000252444 GPR6P46095 362 aaPredicted RBP11.88□□□□□ -0.51
LDLR-201ENST00000252444 CEBPGP53567 150 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.88□□□□□ -0.51
LDLR-201ENST00000252444 ETV2O00321 342 aaPredicted RBP11.87□□□□□ -0.51
LDLR-201ENST00000252444 PDLIM4P50479 330 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 IL24Q13007 206 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 TMEM268Q5VZI3 342 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 PRSS45Q7RTY3 260 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 COMMD1Q8N668 190 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 DEFB108BQ8NET1 73 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 M0QZ24 198 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 ACOT6Q3I5F7 207 aaPredicted RBP11.87□□□□□ -0.51
LDLR-201ENST00000252444 VAX1Q5SQQ9 334 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 ALX4Q9H161 411 aaPredicted RBP11.87□□□□□ -0.51
LDLR-201ENST00000252444 TOXO94900 526 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 ABHD17AQ96GS6 310 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 MRPL22Q9NWU5 206 aaKnown RBP11.87□□□□□ -0.51
LDLR-201ENST00000252444 ONECUT1Q9UBC0 465 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 SERPINF1P36955 418 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 PMP22Q01453 160 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 SLC25A42Q86VD7 318 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 ZNF561Q8N587 486 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 RHNO1Q9BSD3 238 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 C1QTNF5Q9BXJ0 243 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 UBTD1Q9HAC8 227 aa11.87□□□□□ -0.51
LDLR-201ENST00000252444 LYPD3O95274 346 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 COMPP49747 757 aaPredicted RBP11.86□□□□□ -0.51
LDLR-201ENST00000252444 FCN2Q15485 313 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 MOGAT3Q86VF5 341 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 SCARB1Q8WTV0 552 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 RNF167Q9H6Y7 350 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 NEURL1O76050 574 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 DUS4LO95620 317 aaKnown RBP11.86□□□□□ -0.51
LDLR-201ENST00000252444 GPANK1O95872 356 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 MUC1P15941 1255 aaPredicted RBP11.86□□□□□ -0.51
LDLR-201ENST00000252444 ST6GALNAC3Q8NDV1 305 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 ABHD1Q96SE0 405 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 PPP1R14DQ9NXH3 145 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 CROCCQ5TZA2 2017 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 GDF9O60383 454 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 TMEM123Q8N131 208 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 PRSS50Q9UI38 385 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 CDRT15L2A8MXV6 281 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 UMAD1C9J7I0 102 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 I3L521 148 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 ANGPTL7O43827 346 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 CLPSP04118 112 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 FAM87AP0C7U9 286 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 CEACAM6P40199 344 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 LCN10Q6JVE6 187 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 ZNF66Q6ZN08 573 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 OR5H6Q8NGV6 325 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 FAM222BQ8WU58 562 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 SEC22CQ9BRL7 303 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 SLC25A32Q9H2D1 315 aa11.86□□□□□ -0.51
LDLR-201ENST00000252444 BCL3P20749 454 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 DSCR9P59020 149 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 PTGDSP41222 190 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 DEFA5Q01523 94 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 ZNF808Q8N4W9 903 aaPredicted RBP11.85□□□□□ -0.51
LDLR-201ENST00000252444 FAM234AQ9H0X4 552 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 G6PC2Q9NQR9 355 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 LY6G6EA0A0G2JKS1 128 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 LALBAP00709 142 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 MMP9P14780 707 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 OR2B8PP59922 312 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 CELF2-AS1Q8N7Q2 184 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 MARCH1Q8TCQ1 289 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 CCL17Q92583 94 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 SPACA5Q96QH8 159 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 CNTNAP3Q9BZ76 1288 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 PRNDQ9UKY0 176 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 U3KQA8 63 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 A8MV72 311 aaPredicted RBP11.85□□□□□ -0.51
LDLR-201ENST00000252444 ATP5IP56385 69 aaPredicted RBP11.85□□□□□ -0.51
LDLR-201ENST00000252444 NAAAQ02083 359 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 INPP5JQ15735 1006 aaPredicted RBP11.85□□□□□ -0.51
LDLR-201ENST00000252444 RNFT1Q5M7Z0 435 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 TMEM91Q6ZNR0 172 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 Q6ZS92 163 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 OR2J1Q9GZK6 312 aa11.85□□□□□ -0.51
LDLR-201ENST00000252444 MC5RP33032 325 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 MRPL13Q9BYD1 178 aaKnown RBP11.84□□□□□ -0.51
LDLR-201ENST00000252444 TRBV23-1A0A0A0MS06 115 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 ZDHHC11Q9H8X9 412 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 C3orf85A0A1B0GTC6 90 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 LRRC3CA6NJW4 275 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 M0R1X1 148 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 IL11P20809 199 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 SHEQ5VZ18 495 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 UNQ6494/PRO21346Q6UXR6 183 aa11.84□□□□□ -0.51
LDLR-201ENST00000252444 CCDC71Q8IV32 467 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms