RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZFP62Q8NB50 900 aaPredicted RBP9.22□□□□□ -0.93
USP28-201ENST00000003302 SAP25Q8TEE9 199 aa9.22□□□□□ -0.93
USP28-201ENST00000003302 TMEM54Q969K7 222 aa9.22□□□□□ -0.93
USP28-201ENST00000003302 PHF7Q9BWX1 381 aaPredicted RBP9.22□□□□□ -0.93
USP28-201ENST00000003302 SNAPINO95295 136 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 TFF1P04155 84 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 GNRHRP30968 328 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 MEOX2P50222 304 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 FAM3AP98173 230 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 COL19A1Q14993 1142 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 CEACAM16Q2WEN9 425 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 SLC25A26Q70HW3 274 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 IMMP1LQ96LU5 166 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 SYT3Q9BQG1 590 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 EIF5A2Q9GZV4 153 aaKnown RBP9.21□□□□□ -0.93
USP28-201ENST00000003302 TUBD1Q9UJT1 453 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 HSF4Q9ULV5 492 aa9.21□□□□□ -0.93
USP28-201ENST00000003302 ZNF724A8MTY0 619 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 H0YL77 283 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 SGCEO43556 437 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 MDKP21741 143 aaPredicted RBP9.21□□□□□ -0.94
USP28-201ENST00000003302 AVPI1Q5T686 147 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 RABEPKQ7Z6M1 372 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 SPAG16Q8N0X2 631 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 SLC7A10Q9NS82 523 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 C14orf166Q9Y224 244 aaKnown RBP9.21□□□□□ -0.94
USP28-201ENST00000003302 STARD10Q9Y365 291 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 PCNX1Q96RV3 2341 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 CST4P01036 141 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 EPHA8P29322 1005 aaPredicted RBP9.21□□□□□ -0.94
USP28-201ENST00000003302 ALDH3B1P43353 468 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 HOXA1P49639 335 aaPredicted RBP9.21□□□□□ -0.94
USP28-201ENST00000003302 FABP9Q0Z7S8 132 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 GUK1Q16774 197 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 ZNF818PQ6ZRF7 136 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 ZNF295-AS1Q8N0V1 137 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 LILRB1Q8NHL6 650 aaPredicted RBP9.21□□□□□ -0.94
USP28-201ENST00000003302 WNT5BQ9H1J7 359 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 MOB1AQ9H8S9 216 aa9.21□□□□□ -0.94
USP28-201ENST00000003302 TERTO14746 1132 aaKnown RBP9.2□□□□□ -0.94
USP28-201ENST00000003302 OR8U8P0C7N1 319 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 DEFA4P12838 97 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 CTSSP25774 331 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 HTR5AP47898 357 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 GRB2P62993 217 aaKnown RBP9.2□□□□□ -0.94
USP28-201ENST00000003302 CYCSP99999 105 aaKnown RBP9.2□□□□□ -0.94
USP28-201ENST00000003302 SRYQ05066 204 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 GFI1BQ5VTD9 330 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 SGPP2Q8IWX5 399 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 LYPD6BQ8NI32 183 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 FAM213BQ8TBF2 198 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 S100A13Q99584 98 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 DECR2Q9NUI1 292 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 GHRLQ9UBU3 117 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 A0A0U1RQV5 110 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 ZNF716A6NP11 495 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 PROB1E7EW31 1015 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 M0R036 132 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 WISP2O76076 250 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 YIF1AO95070 293 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 HIST1H3AP68431 136 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 C10orf128Q5T292 105 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 HIST2H3PS2Q5TEC6 136 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 SPINK14Q6IE38 97 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 HIST2H3AQ71DI3 136 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 C1orf123Q9NWV4 160 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 PUS1Q9Y606 427 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP28-201ENST00000003302 SERPINE3A8MV23 424 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 GALR2O43603 387 aaPredicted RBP9.2□□□□□ -0.94
USP28-201ENST00000003302 HLA-HP01893 362 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 ZNF728P0DKX0 622 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 TAS2R46P59540 309 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 TCEAL6Q6IPX3 200 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 P4HA3Q7Z4N8 544 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 TCEAL3Q969E4 200 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 NUDT16L1Q9BRJ7 211 aaKnown RBP9.2□□□□□ -0.94
USP28-201ENST00000003302 UBE2ZQ9H832 354 aaPredicted RBP9.2□□□□□ -0.94
USP28-201ENST00000003302 IL34Q6ZMJ4 242 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 SSX7Q7RTT5 188 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 CCDC36Q8IYA8 594 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 BCL2L14Q9BZR8 327 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 VSIRQ9H7M9 311 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 NAA60Q9H7X0 242 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 HDGFL3Q9Y3E1 203 aa9.2□□□□□ -0.94
USP28-201ENST00000003302 MAP1AP78559 2803 aaPredicted RBP9.2□□□□□ -0.94
USP28-201ENST00000003302 CTSDP07339 412 aaPredicted RBP9.19□□□□□ -0.94
USP28-201ENST00000003302 LINC00205P59089 165 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 LSM6P62312 80 aaKnown RBP9.19□□□□□ -0.94
USP28-201ENST00000003302 OR5L2Q8NGL0 311 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 CD300LFQ8TDQ1 290 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 C5orf52A6NGY3 159 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 TXNL1O43396 289 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 SSSCA1O60232 199 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 LMO1P25800 156 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 SLC35A1P78382 337 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 ZXDAP98168 799 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 FAM76BQ5HYJ3 339 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 ZNF611Q8N823 705 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 C18orf12Q96KH6 178 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 TRAPPC6AO75865 159 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms