RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ABCC5O15440 1437 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 OR2M5A3KFT3 312 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 C7orf72A4D263 438 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 KLF7O75840 302 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-221ENST00000641996 APOMO95445 188 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 CXorf1O96002 111 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 CLEC12BQ2HXU8 276 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 TCTN3Q6NUS6 607 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 OR2T12Q8NG77 320 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 OR10D3Q8NH80 312 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 C15orf40Q8WUR7 153 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 ORAI2Q96SN7 254 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 RAB6CQ9H0N0 254 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 ACOT13Q9NPJ3 140 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 MMP26Q9NRE1 261 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 NPIPB11E5RHQ5 1161 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 DBIP07108 87 aaKnown RBP3.15□□□□□ -1.9
SCN1A-221ENST00000641996 PPIBP23284 216 aaKnown RBP3.15□□□□□ -1.9
SCN1A-221ENST00000641996 PAX9P55771 341 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 DCAF12Q5T6F0 453 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF595Q8IYB9 648 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 MS4A4EQ96PG1 132 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 GABRG3Q99928 467 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 CWH43Q9H720 699 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 TRAV30A0A087WSZ9 112 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1W2PPE3 182 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 REM1O75628 298 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF865P0CJ78 1059 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 IFITM1P13164 125 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 PGAM2P15259 253 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 THBS2P35442 1172 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 BTG2P78543 158 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ELAVL1Q15717 326 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 IL34Q6ZMJ4 242 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 KREMEN2Q8NCW0 462 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 OR1J1Q8NGS3 322 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 TSPAN32Q96QS1 320 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 LPAR4Q99677 370 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 HSPB9Q9BQS6 159 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 NDC1Q9BTX1 674 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 MRPS18BQ9Y676 258 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 RBMY1BA6NDE4 496 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 RBMY1EA6NEQ0 496 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF561-AS1K7EIQ3 104 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 BUB3O43684 328 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 RBMY1DP0C7P1 496 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 RBMY1A1P0DJD3 496 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF121P58317 390 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF506Q5JVG8 444 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 DEFB128Q7Z7B8 93 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 OR1L3Q8NH93 324 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF418Q8TF45 676 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 OR5P3Q8WZ94 311 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 KLHDC7BQ96G42 594 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 INSM2Q96T92 566 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM38BQ9NVV0 291 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 XIRP1Q702N8 1843 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 YTHDC2Q9H6S0 1430 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1W2PPK0 400 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 IGSF23A1L1A6 192 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 HLA-DQA2P01906 255 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H1CP16403 213 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 OR1D5P58170 312 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 MESP2Q0VG99 397 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 P2RY6Q15077 328 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 PMVKQ15126 192 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 RYBPQ8N488 228 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 UPRTQ96BW1 309 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 PELI1Q96FA3 418 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 FABP5P3A8MUU1 101 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF727A8MUV8 499 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 A8MXK9 166 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 IL2RBP14784 551 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ACP1P24666 158 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 TM4SF1P30408 202 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 LGALSLQ3ZCW2 172 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 OR2T5Q6IEZ7 315 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 CD200R1LQ6Q8B3 271 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 CLEC20AQ6ZU45 233 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 IRF2BP2Q7Z5L9 587 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 DUSP18Q8NEJ0 188 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 OR2T29Q8NH02 315 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 WIPF2Q8TF74 440 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 PDCD1LG2Q9BQ51 273 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF665Q9H7R5 613 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 SLC6A9P48067 706 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 WNT4P56705 351 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 SLC35A1P78382 337 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 CCL7P80098 99 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 CXorf66Q5JRM2 361 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 SYS1Q8N2H4 156 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 GJC3Q8NFK1 279 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 DOK4Q8TEW6 326 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 BORCS8Q96FH0 119 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 EMCNQ9ULC0 261 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 NCOA2Q15596 1464 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 FNDC1Q4ZHG4 1894 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 FNDC10F2Z333 226 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 TIMM23O14925 209 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 LYZL6O75951 148 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms