RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 NKX2-2O95096 273 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SQSTM1Q13501 440 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 NSDHLQ15738 373 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SPANXN5Q5MJ07 72 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 PRSS3P2Q8NHM4 247 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 BCL2L2Q92843 193 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ST20Q9HBF5 79 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 DAPP1Q9UN19 280 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 VSIG10L2P0DP72 767 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 LBX1P52954 281 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ID2Q02363 134 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 SLC16A11Q8NCK7 471 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 OR8B3Q8NGG8 313 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 NT5CQ8TCD5 201 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 CDX2Q99626 313 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 RARRES2Q99969 163 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 GNG12Q9UBI6 72 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 PLAGL1Q9UM63 463 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 MRPS16Q9Y3D3 137 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 HS3ST3A1Q9Y663 406 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ABCA3Q99758 1704 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ALS2Q96Q42 1657 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 COLCA2A8K830 154 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 B4GALT3O60512 393 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 TNFSF13O75888 250 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 GYPAP02724 150 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 BCL3P20749 454 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 OR2Y1Q8NGV0 311 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 PFN4Q8NHR9 129 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 ERGIC1Q969X5 290 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 PARP12Q9H0J9 701 aaKnown RBP4.16□□□□□ -1.74
SCN1A-220ENST00000641603 C5AR2Q9P296 337 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 STARD10Q9Y365 291 aa4.16□□□□□ -1.74
SCN1A-220ENST00000641603 M0R135 149 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 CDC14BO60729 498 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 GALNSP34059 522 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 PAQR9Q6ZVX9 377 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 TRMT61AQ96FX7 289 aaKnown RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF799Q96GE5 643 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 MMP25Q9NPA2 562 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 NTNG1Q9Y2I2 539 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 OR2W1Q9Y3N9 320 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 WNK3Q9BYP7 1800 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 C1QTNF9BB2RNN3 333 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 H3BSH0 61 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 GCM2O75603 506 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 DHRS3O75911 302 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 AKR7A3O95154 331 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 UTS2O95399 124 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 F13BP05160 661 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 SHBQ15464 509 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 Q5BKY6 102 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 PRAMEF5Q5TYX0 476 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 PRAMEF6Q5VXH4 476 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 LYSMD4Q5XG99 296 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 RBM45Q8IUH3 476 aaKnown RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM45BQ96B21 275 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 LPAR5Q9H1C0 372 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 LTBP3Q9NS15 1303 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 ST6GALNAC2Q9UJ37 374 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 ICAM5Q9UMF0 924 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 MRPS2Q9Y399 296 aaKnown RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 PPIL1Q9Y3C6 166 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 ERHP84090 104 aaKnown RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 MED25Q71SY5 747 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 TSEN54Q7Z6J9 526 aaKnown RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 RTN4RL1Q86UN2 441 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 DMRTA2Q96SC8 542 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 HEXA-AS1Q9H8Q6 139 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 JKAMPQ9P055 326 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 SLC17A4Q9Y2C5 497 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 DOCK2Q92608 1830 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 IGHV1-69-2A0A0G2JMI3 117 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 AMY1AP04745 511 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 NPY1RP25929 384 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 HIST1H1AQ02539 215 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 FAM27D1Q5T7N8 215 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 GABRG3Q99928 467 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM106CQ9BVX2 250 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 RBKSQ9H477 322 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 SIGLEC1Q9BZZ2 1709 aa4.15□□□□□ -1.74
SCN1A-220ENST00000641603 PRRC2BQ5JSZ5 2229 aaKnown RBP4.15□□□□□ -1.74
SCN1A-220ENST00000641603 SLC31A1O15431 190 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 MPPED1O15442 326 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 EDIL3O43854 480 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 GCH1P30793 250 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 SP3Q02447 781 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 CST9Q5W186 159 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 OR6C3Q9NZP0 311 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 FBLN5Q9UBX5 448 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ICOSLGO75144 302 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 SLC2A10O95528 541 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 TXNDC8Q6A555 127 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 BCORQ6W2J9 1755 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 TRAV34A0A0B4J273 112 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 SH2D1BO14796 132 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 LANCL1O43813 399 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BKO60814 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BJP06899 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 TIMP2P16035 220 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms