RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 IGKV1D-12P01611 117 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 IGHV3-9P01782 118 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 RUNX1Q01196 453 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 HIST3H3Q16695 136 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 SUMF2Q8NBJ7 301 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 PP6455Q8WZ26 134 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 SPACA9Q96E40 222 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-211ENST00000622020 BORCS8Q96FH0 119 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 ALKBH3Q96Q83 286 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-211ENST00000622020 ZNF442Q9H7R0 627 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 PARPBPQ9NWS1 579 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 DHHO43323 396 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 OR7C1O76099 320 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-211ENST00000622020 IGHV2-70P01814 119 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 B4GALT1P15291 398 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 NDUFA6P56556 154 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 ZNF239Q16600 458 aaKnown RBP13.69□□□□□ -0.22
NPHP4-211ENST00000622020 LYPD6BQ8NI32 183 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 PAPOLGQ9BWT3 736 aaKnown RBP13.69□□□□□ -0.22
NPHP4-211ENST00000622020 V9GYS6 101 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 H0YL77 283 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 SSSCA1O60232 199 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 GPR137BO60478 399 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 SEC11BP0C7V7 166 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 AADACP22760 399 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 ZNF84P51523 738 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 RPS23P62266 143 aaKnown RBP13.69□□□□□ -0.22
NPHP4-211ENST00000622020 PPA1Q15181 289 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 SLC16A14Q7RTX9 510 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 PIGCQ92535 297 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 SLC7A11Q9UPY5 501 aa13.69□□□□□ -0.22
NPHP4-211ENST00000622020 DIDO1Q9BTC0 2240 aaKnown RBP13.68□□□□□ -0.22
NPHP4-211ENST00000622020 S100PP25815 95 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 RGS19P49795 217 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 GNMTQ14749 295 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 ZNF468Q5VIY5 522 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-211ENST00000622020 NSUN5P2Q63ZY6 315 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 LIAT1Q6ZQX7 453 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 OR1J1Q8NGS3 322 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 NABP1Q96AH0 204 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 LIPGQ9Y5X9 500 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 DOCK7Q96N67 2140 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 H7C1Q1 480 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 IGFBP4P22692 258 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 MSX1P28360 303 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 DUSP1P28562 367 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 EWSR1Q01844 656 aaKnown RBP eCLIP13.68□□□□□ -0.228e-8■■■■■ 31.8
NPHP4-211ENST00000622020 KIAA0141Q14154 515 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-211ENST00000622020 SHBQ15464 509 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 CXorf66Q5JRM2 361 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-211ENST00000622020 GUSBP11Q6P575 273 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 C17orf78Q8N4C9 275 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 TCTEX1D2Q8WW35 142 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 NAT6Q93015 286 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 NTNG2Q96CW9 530 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 SEBOXQ9HB31 216 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-211ENST00000622020 CRLF2Q9HC73 371 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 POMT1Q9Y6A1 747 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 MTCH2Q9Y6C9 303 aa13.68□□□□□ -0.22
NPHP4-211ENST00000622020 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-211ENST00000622020 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-211ENST00000622020 H3BP45 60 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 CCL3P10147 92 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 RNF212Q495C1 297 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 HPSE2Q8WWQ2 592 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 MSI2Q96DH6 328 aaKnown RBP13.67□□□□□ -0.22
NPHP4-211ENST00000622020 PISDQ9UG56 409 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 AP4M1O00189 453 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 CD63P08962 238 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 CCNOP22674 350 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 ATP6V0CP27449 155 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 ZNF133P52736 654 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-211ENST00000622020 HERV-K104P61576 105 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 TLE1Q04724 770 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 HNF4GQ14541 408 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 HMGN3Q15651 99 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 TSC22D1Q15714 1073 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 Q6ZPA2 131 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 MR1Q95460 341 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 SPTSSAQ969W0 71 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 GINS3Q9BRX5 216 aa13.67□□□□□ -0.22
NPHP4-211ENST00000622020 A0A0U1RQV5 110 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 NTF4P34130 210 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 NPBWR2P48146 333 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 RBP2P50120 134 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 LSM6P62312 80 aaKnown RBP13.66□□□□□ -0.22
NPHP4-211ENST00000622020 INTS12Q96CB8 462 aaKnown RBP13.66□□□□□ -0.22
NPHP4-211ENST00000622020 PBDC1Q9BVG4 233 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 METTL1Q9UBP6 276 aaKnown RBP13.66□□□□□ -0.22
NPHP4-211ENST00000622020 CHCHD2Q9Y6H1 151 aaPredicted RBP13.66□□□□□ -0.22
NPHP4-211ENST00000622020 IGSF23A1L1A6 192 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 F10P00742 488 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 IGHV2-5P01817 119 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 TAGLN2P37802 199 aaKnown RBP13.66□□□□□ -0.22
NPHP4-211ENST00000622020 EIF2S3P41091 472 aaKnown RBP13.66□□□□□ -0.22
NPHP4-211ENST00000622020 ALDH3B1P43353 468 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 ZNF674Q2M3X9 581 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 C9orf135Q5VTT2 229 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 LGI3Q8N145 548 aa13.66□□□□□ -0.22
NPHP4-211ENST00000622020 TMEM171Q8WVE6 324 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms