RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 NTNG2Q96CW9 530 aa17■□□□□ 0.31
PDLIM3-212ENST00000620787 SPSB2Q99619 263 aa17■□□□□ 0.31
PDLIM3-212ENST00000620787 ABHD14AQ9BUJ0 271 aa17■□□□□ 0.31
PDLIM3-212ENST00000620787 FAM230AA0A1W2PPH8 454 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 FAM221AA4D161 298 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 TERTO14746 1132 aaKnown RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 PHF1O43189 567 aaPredicted RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 RPS10P46783 165 aaKnown RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 NOVA1P51513 510 aaKnown RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 AFF3P51826 1226 aaKnown RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 RAB2AP61019 212 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 NKAIN1Q4KMZ8 207 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 SLC35G3Q8N808 338 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 OR2AE1Q8NHA4 323 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 TMED3Q9Y3Q3 217 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 RBFOX3A6NFN3 312 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 CD63P08962 238 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 H3F3AP84243 136 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 ZNF574Q6ZN55 896 aaPredicted RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 OR10AD1Q8NGE0 317 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 ZNF385AQ96PM9 386 aaKnown RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 TP53RKQ96S44 253 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 SYT3Q9BQG1 590 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 PAPOLGQ9BWT3 736 aaKnown RBP16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 PLEK2Q9NYT0 353 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 DMRT1Q9Y5R6 373 aa16.99■□□□□ 0.31
PDLIM3-212ENST00000620787 FAM24AA6NFZ4 105 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 GATCO43716 136 aaKnown RBP16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 ZFAND5O76080 213 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 DKK1O94907 266 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 TIAF1O95411 115 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 ATP6V0CP27449 155 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 LTBRP36941 435 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 UCP3P55916 312 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 GNMTQ14749 295 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 SHBQ15464 509 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 RABEPKQ7Z6M1 372 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 OR2C3Q8N628 320 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 OR2G3Q8NGZ4 309 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 MMP24Q9Y5R2 645 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 MTCH2Q9Y6C9 303 aa16.98■□□□□ 0.31
PDLIM3-212ENST00000620787 IGSF23A1L1A6 192 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 CDRT15L2A8MXV6 281 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 C2CD4DB7Z1M9 353 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 H3BQ15 152 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 GEMIN2O14893 280 aaKnown RBP16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 PIGYQ3MUY2 71 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 OR2B11Q5JQS5 317 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 ASCL4Q6XD76 172 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 Q6ZPA2 131 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 CPEB2Q7Z5Q1 589 aaKnown RBP16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 FBXL14Q8N1E6 418 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 SPTSSAQ969W0 71 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 RAB39BQ96DA2 213 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 RBM24Q9BX46 236 aaKnown RBP16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 KIAA1549Q9HCM3 1950 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 ZNF727A8MUV8 499 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 DHHO43323 396 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 GLB1P16278 677 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 ITGA3P26006 1051 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 CDX1P47902 265 aaPredicted RBP16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 HAGHQ16775 308 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 MEX3BQ6ZN04 569 aaKnown RBP16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 TMEM123Q8N131 208 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 OR8G5Q8NG78 346 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 SNIP1Q8TAD8 396 aaKnown RBP16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 SPACA9Q96E40 222 aaPredicted RBP16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 CHRDQ9H2X0 955 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 ABCA7Q8IZY2 2146 aa16.97■□□□□ 0.31
PDLIM3-212ENST00000620787 IGHV3-15A0A0B4J1V0 119 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 IGKV1-12A0A0C4DH73 117 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 NKX2-6A6NCS4 301 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 HSD17B6O14756 317 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 PITX3O75364 302 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 IGKV1D-12P01611 117 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 SRP19P09132 144 aaKnown RBP16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 PNLIPP16233 465 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 RND3P61587 244 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 PYY3Q5JQD4 70 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 WDR74Q6RFH5 385 aaPredicted RBP16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 ZFP62Q8NB50 900 aaPredicted RBP16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 SLAMF9Q96A28 289 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 RASL10BQ96S79 203 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 ZNF286AQ9HBT8 521 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 CEP192Q8TEP8 1941 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 ASCC3Q8N3C0 2202 aaKnown RBP16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 ZNF724A8MTY0 619 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 WRBO00258 174 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 AADACP22760 399 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 CRYGSP22914 178 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 FKBP2P26885 142 aaKnown RBP16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 PRSS12P56730 875 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 ZNF266Q14584 549 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 PRAMEF20Q5VT98 475 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 SP5Q6BEB4 398 aaPredicted RBP16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 CCDC71LQ8N9Z2 235 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 OR14L1PQ8NHC6 308 aa16.96■□□□□ 0.31
PDLIM3-212ENST00000620787 ZNF729A6NN14 1252 aaPredicted RBP16.95■□□□□ 0.3
PDLIM3-212ENST00000620787 CNN3Q15417 329 aaKnown RBP16.95■□□□□ 0.3
PDLIM3-212ENST00000620787 Q8WTZ3 238 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms