RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 FGF17O60258 216 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 CA2P00918 260 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 HRASP01112 189 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 CXCL1P09341 107 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 MST1P26927 711 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 BTCP35070 178 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 B4GALNT1Q00973 533 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 KIRREL2Q6UWL6 708 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 RNF2Q99496 336 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 PLEK2Q9NYT0 353 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 LRP12Q9Y561 859 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 ASCC3Q8N3C0 2202 aaKnown RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 ODAMA1E959 279 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 ZNF217O75362 1048 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 EOMESO95936 686 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 TNFP01375 233 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 BSGP35613 385 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 PLGLB1Q02325 96 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 DMKNQ6E0U4 476 aaPredicted RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 OR13G1Q8NGZ3 307 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 WFDC1Q9HC57 220 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 CES1P1Q9UKY3 287 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 A0A096LPE4 126 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 LOC101059948A0A1B0GTJ6 334 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 A0A1W2PN81 502 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 A0A1W2PPZ6 126 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 C5orf49A4QMS7 147 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 KLF7O75840 302 aaPredicted RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 HIST1H1BP16401 226 aaKnown RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 RTL10Q7L3V2 364 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 OR10V1Q8NGI7 309 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 PHRF1Q9P1Y6 1649 aaKnown RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 TEX50A0A1B0GTY4 177 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 HLA-DQB1P01920 261 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 GRPP07492 148 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 FUT6P51993 359 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 FKBP1AP62942 108 aaKnown RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 SLC38A11Q08AI6 406 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 FXYD3Q14802 87 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 BCORP1Q8N888 145 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 THYN1Q9P016 225 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 CREBBPQ92793 2442 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 RER1O15258 196 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 NDUFB4O95168 129 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 SLC35D3Q5M8T2 416 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 NR2C2APQ86WQ0 139 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 WFDC3Q8IUB2 231 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 EDARADDQ8WWZ3 215 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 CACNG5Q9UF02 275 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 DOPEY2Q9Y3R5 2298 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 TP53I11O14683 189 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 CDC14BO60729 498 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 CLEC3AO75596 197 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 GCM2O75603 506 aaPredicted RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 EGR1P18146 543 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 UNQ5815/PRO19632Q6UWF5 114 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 ZNF664Q8N3J9 261 aa4.47□□□□□ -1.69
VPS13D-214ENST00000620676 NEIL1Q96FI4 390 aaPredicted RBP4.47□□□□□ -1.69
VPS13D-214ENST00000620676 IGKV6-21A0A0C4DH24 114 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 HELTA6NFD8 242 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 ATP6V0CP27449 155 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 PCK2Q16822 640 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 CST9Q5W186 159 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 GNG12Q9UBI6 72 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 LNP1A1A4G5 178 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 MT-CO3P00414 261 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 AMBPP02760 352 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 EWSR1Q01844 656 aaKnown RBP eCLIP4.46□□□□□ -1.69
VPS13D-214ENST00000620676 FBLN7Q53RD9 439 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 HIST3H2BBQ8N257 126 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 OR52M1Q8NGK5 317 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 ZNF665Q9H7R5 613 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 GP6Q9HCN6 339 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 SLC17A5Q9NRA2 495 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 SPEF2Q9C093 1822 aa4.46□□□□□ -1.69
VPS13D-214ENST00000620676 TCN2P20062 427 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 MRPL18Q9H0U6 180 aaKnown RBP4.46□□□□□ -1.7
VPS13D-214ENST00000620676 A6NDN8 102 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 SLC17A3O00476 420 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 SOD2P04179 222 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 CALHM1Q8IU99 346 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 ST6GALNAC2Q9UJ37 374 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 PTGER4P35408 488 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 RELQ04864 619 aaPredicted RBP4.46□□□□□ -1.7
VPS13D-214ENST00000620676 KIAA0040Q15053 153 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 DNLZQ5SXM8 178 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 FLRT3Q9NZU0 649 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 ZNF107Q9UII5 783 aaPredicted RBP4.46□□□□□ -1.7
VPS13D-214ENST00000620676 C9J4A7 227 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 IFNL4K9M1U5 179 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 PSMB2P49721 201 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 ARF6P62330 175 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 BTG2P78543 158 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 EGR3Q06889 387 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 R4GMQ9 66 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 MYH14Q7Z406 1995 aaKnown RBP4.46□□□□□ -1.7
VPS13D-214ENST00000620676 C9JQL5 133 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 NRASP01111 189 aa4.46□□□□□ -1.7
VPS13D-214ENST00000620676 HSPB1P04792 205 aaKnown RBP4.46□□□□□ -1.7
VPS13D-214ENST00000620676 RSPO4Q2I0M5 234 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms