RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 RPA2P15927 270 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 HTR2BP41595 481 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 CDK10Q15131 360 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 FAM57AQ8TBR7 257 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 C12orf4Q9NQ89 552 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 CA10Q9NS85 328 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 AK3Q9UIJ7 227 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 PDCD6O75340 191 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 OR4E1P0C645 316 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 CBR1P16152 277 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 ADAM5Q6NVV9 412 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 COQ8AQ8NI60 647 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 WDR13Q9H1Z4 485 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 TAAR3PQ9P1P4 343 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 SLC23A1Q9UHI7 598 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 V9GYS6 101 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 MEIKINA0A087WXM9 373 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 ABCD4O14678 606 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 KLF3P57682 345 aaPredicted RBP13.53□□□□□ -0.24
CPSF1-213ENST00000620219 ZNF260Q3ZCT1 412 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 GLDNQ6ZMI3 551 aaPredicted RBP13.53□□□□□ -0.24
CPSF1-213ENST00000620219 CDH24Q86UP0 819 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 TECTBQ96PL2 329 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 C1QTNF5Q9BXJ0 243 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 ESRP2Q9H6T0 727 aaKnown RBP13.53□□□□□ -0.24
CPSF1-213ENST00000620219 GP6Q9HCN6 339 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 DECR2Q9NUI1 292 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 NDRG3Q9UGV2 375 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 CPAMD8Q8IZJ3 1885 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 C1QTNF9BB2RNN3 333 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 C1QTNF9P0C862 333 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 ZNF728P0DKX0 622 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 VSIG10L2P0DP72 767 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 NCKAP5O14513 1909 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 K7ENP7 123 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 CEACAM21Q3KPI0 293 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 ACTBL2Q562R1 376 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 OR5A2Q8NGI9 324 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 STARD4Q96DR4 205 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 NECAP2Q9NVZ3 263 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 C1orf123Q9NWV4 160 aa13.53□□□□□ -0.24
CPSF1-213ENST00000620219 A0A1B0GUH1 482 aa13.52□□□□□ -0.24
CPSF1-213ENST00000620219 WNT5AP41221 380 aa13.52□□□□□ -0.24
CPSF1-213ENST00000620219 GSG1LQ6UXU4 331 aa13.52□□□□□ -0.24
CPSF1-213ENST00000620219 NLRC3Q7RTR2 1065 aa13.52□□□□□ -0.24
CPSF1-213ENST00000620219 INO80EQ8NBZ0 244 aaPredicted RBP13.52□□□□□ -0.24
CPSF1-213ENST00000620219 AMDHD2Q9Y303 409 aa13.52□□□□□ -0.24
CPSF1-213ENST00000620219 ASPMQ8IZT6 3477 aa13.52□□□□□ -0.24
CPSF1-213ENST00000620219 OR5B21A6NL26 309 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 TMEM14DPA8MWL7 114 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 M0R233 179 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 SH2D1BO14796 132 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 RPS23P62266 143 aaKnown RBP13.52□□□□□ -0.25
CPSF1-213ENST00000620219 MICBQ29980 383 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 Q5BKY6 102 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 TERB2Q8NHR7 220 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 EIF2S3LQ2VIR3 472 aaKnown RBP13.52□□□□□ -0.25
CPSF1-213ENST00000620219 PLAC9Q5JTB6 97 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 THOC7Q6I9Y2 204 aaKnown RBP13.52□□□□□ -0.25
CPSF1-213ENST00000620219 TMEM185AQ8NFB2 350 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 RFESDQ8TAC1 157 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 FBXW5Q969U6 566 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 REPIN1Q9BWE0 567 aaKnown RBP13.52□□□□□ -0.25
CPSF1-213ENST00000620219 B3GNT2Q9NY97 397 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 IL36RNQ9UBH0 155 aa13.52□□□□□ -0.25
CPSF1-213ENST00000620219 H3BUI4 141 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 HSD17B6O14756 317 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 EPHA1P21709 976 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 MZT1Q08AG7 82 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 TNRC6AQ8NDV7 1962 aaKnown RBP13.51□□□□□ -0.25
CPSF1-213ENST00000620219 COL5A1P20908 1838 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-213ENST00000620219 TNFSF12O43508 249 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 PNLIPRP3Q17RR3 467 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 SLC25A24Q6NUK1 477 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 LRRC29Q8WV35 223 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 SULT4A1Q9BR01 284 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 OCSTAMPQ9BR26 566 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 TEX46H3BTG2 121 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 RPL36A-HNRNPH2H7BZ11 118 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 LILRA1O75019 489 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 ST8SIA4Q92187 359 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 WDR89Q96FK6 387 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-213ENST00000620219 SPACA1Q9HBV2 294 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 OR2S2Q9NQN1 319 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 COX5BP10606 129 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 MPV17P39210 176 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 CEBPDP49716 269 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-213ENST00000620219 SP6Q3SY56 376 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 OR2AK2Q8NG84 335 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 ZNF581Q9P0T4 197 aa13.51□□□□□ -0.25
CPSF1-213ENST00000620219 SMPD2O60906 423 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 RHBDL1O75783 438 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 IGHV3-13P01766 116 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 IGHV3-7P01780 117 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 FAM166AQ6J272 317 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 WBP1Q96G27 269 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 SHANK1Q9Y566 2161 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 TMEM50BP56557 158 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 PSG7Q13046 419 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 NRN1LQ496H8 165 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms