RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ZFP62Q8NB50 900 aaPredicted RBP9.47□□□□□ -0.89
UPF3A-212ENST00000619079 HAS2Q92819 552 aa9.47□□□□□ -0.89
UPF3A-212ENST00000619079 BOD1Q96IK1 185 aa9.47□□□□□ -0.89
UPF3A-212ENST00000619079 ATG101Q9BSB4 218 aa9.47□□□□□ -0.89
UPF3A-212ENST00000619079 PRSS38A1L453 326 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 PPP5D1E7EU14 171 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 PLPP3O14495 311 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 GEMIN2O14893 280 aaKnown RBP9.46□□□□□ -0.89
UPF3A-212ENST00000619079 DLEU1O43261 78 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 HPNP05981 417 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 GP1BBP13224 206 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 FUT3P21217 361 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 DAP3P51398 398 aaKnown RBP9.46□□□□□ -0.89
UPF3A-212ENST00000619079 TDGF1P3P51864 188 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 PIGPP57054 158 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 C1orf189Q5VU69 101 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 CYB5R2Q6BCY4 276 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 SP5Q6BEB4 398 aaPredicted RBP9.46□□□□□ -0.89
UPF3A-212ENST00000619079 POMZP3Q6PJE2 187 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 LGI3Q8N145 548 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 OR2C3Q8N628 320 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 OR4X1Q8NH49 305 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 TMEM18Q96B42 140 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 SLAMF6Q96DU3 332 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 SLC46A1Q96NT5 459 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 TBL1XR1Q9BZK7 514 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 ARRDC1-AS1Q9H2J1 176 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 FGF22Q9HCT0 170 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 PRTFDC1Q9NRG1 225 aa9.46□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF701Q9NV72 531 aaPredicted RBP9.46□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF732B4DXR9 585 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 HCRTR2O43614 444 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 EML2O95834 649 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF43P17038 809 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 PGCP20142 388 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 BLVRBP30043 206 aaPredicted RBP9.46□□□□□ -0.9
UPF3A-212ENST00000619079 LIAT1Q6ZQX7 453 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 TGIF2LYQ8IUE0 185 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 DNASE2BQ8WZ79 361 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 C18orf12Q96KH6 178 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 SPACA5Q96QH8 159 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 PECRQ9BY49 303 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 ANGPTL4Q9BY76 406 aa9.46□□□□□ -0.9
UPF3A-212ENST00000619079 RCL1Q9Y2P8 373 aaKnown RBP9.46□□□□□ -0.9
UPF3A-212ENST00000619079 TRAV1-1A0A0B4J248 108 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 A0A0J9YY10 115 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 FOXI3A8MTJ6 420 aaPredicted RBP9.45□□□□□ -0.9
UPF3A-212ENST00000619079 TGFBR3LH3BV60 316 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 AHSA1O95433 338 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 CD38P28907 300 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 APLNRP35414 380 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 MPLP40238 635 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 ALDH3B1P43353 468 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 POLR2HP52434 150 aaKnown RBP9.45□□□□□ -0.9
UPF3A-212ENST00000619079 HNRNPKP61978 463 aaKnown RBP eCLIP9.45□□□□□ -0.9
UPF3A-212ENST00000619079 PAX5Q02548 391 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 COMMD2Q86X83 199 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 NOXO1Q8NFA2 376 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 OR51E1Q8TCB6 317 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 RTN4IP1Q8WWV3 396 aaPredicted RBP9.45□□□□□ -0.9
UPF3A-212ENST00000619079 SYT3Q9BQG1 590 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 HSF4Q9ULV5 492 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 THADAQ6YHU6 1953 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 LOC102723971A0A1B0GUV8 181 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 XKRY2A2RUG3 117 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 CDC14CA4D256 554 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 NPIPB7O75200 414 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 RPLP1P05386 114 aaKnown RBP9.45□□□□□ -0.9
UPF3A-212ENST00000619079 THEGLP0DJG4 465 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF728P0DKX0 622 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 PVRP15151 417 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 GALNSP34059 522 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 PDLIM4P50479 330 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 C21orf62-AS1Q17RA5 79 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 Q6ZSR6 202 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 LYZL2Q7Z4W2 148 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF524Q96C55 264 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 KLHDC7BQ96G42 594 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 P4HTMQ9NXG6 502 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 MYOTQ9UBF9 498 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 PILRBQ9UKJ0 227 aa9.45□□□□□ -0.9
UPF3A-212ENST00000619079 NPIPB13A6NJU9 1138 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 TMEM210A6NLX4 147 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 NPIPB4C9JG80 1138 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 NPIPA5E9PKD4 350 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 CDS2O95674 445 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 NUDT14O95848 222 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 CEACAM1P13688 526 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 NBL1P41271 181 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF133P52736 654 aaPredicted RBP9.44□□□□□ -0.9
UPF3A-212ENST00000619079 SRPXP78539 464 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 TRIM61Q5EBN2 209 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 ABHD12BQ7Z5M8 362 aaPredicted RBP9.44□□□□□ -0.9
UPF3A-212ENST00000619079 RABEPKQ7Z6M1 372 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 OOSP2Q86WS3 158 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 OR13H1Q8NG92 308 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 ABHD14BQ96IU4 210 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 LOXL4Q96JB6 756 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 TMEM208Q9BTX3 173 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 TM2D1Q9BX74 207 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms