RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TDRD6O60522 2096 aaKnown RBP12.38□□□□□ -0.43
CPSF1-212ENST00000616140 PNLIPP16233 465 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 SNRPEP62304 92 aaKnown RBP12.38□□□□□ -0.43
CPSF1-212ENST00000616140 TMEM104Q8NE00 496 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 TMEM37Q8WXS4 190 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 TIMD4Q96H15 378 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 PCDHGA9Q9Y5G4 932 aaKnown RBP12.38□□□□□ -0.43
CPSF1-212ENST00000616140 MDC1Q14676 2089 aaKnown RBP12.38□□□□□ -0.43
CPSF1-212ENST00000616140 TRGV10A0A0A0MS01 117 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 TRAV17A0A0B4J275 112 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 DEFB108AA8MXU0 73 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 IGF2P01344 180 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 CCL4P13236 92 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 MPLP40238 635 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 LSM6P62312 80 aaKnown RBP12.38□□□□□ -0.43
CPSF1-212ENST00000616140 RNPS1Q15287 305 aaKnown RBP12.38□□□□□ -0.43
CPSF1-212ENST00000616140 PRSS53Q2L4Q9 553 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 GAB4Q2WGN9 574 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 D2HGDHQ8N465 521 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 RNF133Q8WVZ7 376 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF586Q9NXT0 402 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 MIA3Q5JRA6 1907 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 MKRN2OSH3BPM6 223 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 IGKV1D-16P01601 117 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 FUT5Q11128 374 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 DGAT2L6Q6ZPD8 337 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 MOB1BQ7L9L4 216 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 FAM219AQ8IW50 185 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 OR2Y1Q8NGV0 311 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 ACY3Q96HD9 319 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 TOLLIPQ9H0E2 274 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 SMOC1Q9H4F8 434 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 LHX9Q9NQ69 397 aa12.38□□□□□ -0.43
CPSF1-212ENST00000616140 POU2F2P09086 479 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 NOVA1P51513 510 aaKnown RBP12.37□□□□□ -0.43
CPSF1-212ENST00000616140 RPL11P62913 178 aaKnown RBP12.37□□□□□ -0.43
CPSF1-212ENST00000616140 LAIR2Q6ISS4 152 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 SLC26A10Q8NG04 563 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF251Q9BRH9 671 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-212ENST00000616140 PSG11Q9UQ72 335 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 TMEM218A2RU14 115 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 MAP1LC3B2A6NCE7 125 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 CLDN34H7C241 214 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 CTSDP07339 412 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-212ENST00000616140 LPAR6P43657 344 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 SLC38A11Q08AI6 406 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 IL13RA2Q14627 380 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF66Q6ZN08 573 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 C9orf40Q8IXQ3 194 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 RPS4Y2Q8TD47 263 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 MAP1LC3BQ9GZQ8 125 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 ZMIZ1Q9ULJ6 1067 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 SCN2AQ99250 2005 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 C5orf67F2Z3F1 127 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 FCGR3BO75015 233 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 LYZL6O75951 148 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 HPP00738 406 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 BGLAPP02818 100 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 CALCRP30988 508 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 MICBQ29980 383 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 BVESQ8NE79 360 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 UCN2Q96RP3 112 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 FAM103A1Q9BTL3 118 aaKnown RBP12.37□□□□□ -0.43
CPSF1-212ENST00000616140 GPR27Q9NS67 375 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 SLC35D1Q9NTN3 355 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 KLHDC2Q9Y2U9 406 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 CHEK1O14757 476 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 C9orf152Q5JTZ5 239 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 LYPD8Q6UX82 237 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 SLC25A42Q86VD7 318 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 FBLIM1Q8WUP2 373 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 OCIAD1Q9NX40 245 aa12.37□□□□□ -0.43
CPSF1-212ENST00000616140 GEMIN2O14893 280 aaKnown RBP12.36□□□□□ -0.43
CPSF1-212ENST00000616140 SURF2Q15527 256 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF766Q5HY98 468 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 SIGLECL1Q8N7X8 197 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 ADAT3Q96EY9 351 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-212ENST00000616140 CA10Q9NS85 328 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 FZR1Q9UM11 496 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 TOX3O15405 576 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-212ENST00000616140 CSN1S1P47710 185 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 LIMS1P48059 325 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 Q3ZCU0 254 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 SPINK14Q6IE38 97 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 OR13G1Q8NGZ3 307 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF426Q9BUY5 554 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 GHITMQ9H3K2 345 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 CTRB1P17538 263 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 MEOX1P50221 254 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 CTRB2Q6GPI1 263 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 OR2A2Q6IF42 318 aa12.36□□□□□ -0.43
CPSF1-212ENST00000616140 PTPRFP10586 1907 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 MT-CO3P00414 261 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 OR3A1P47881 315 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 SSPNQ14714 243 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 FFAR4Q5NUL3 377 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CHAC2Q8WUX2 184 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CLCF1Q9UBD9 225 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CACFD1Q9UGQ2 172 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms