RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PRKACAP17612 351 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 KIR2DL3P43628 341 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 GATA4P43694 442 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 Q8IYB0 196 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 PIK3IP1Q96FE7 263 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 PLEKHJ1Q9NW61 149 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 RCC2Q9P258 522 aaKnown RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 ZDHHC8Q9ULC8 765 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 ANAPC10Q9UM13 185 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 PRSS44E7EML9 344 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 PDCD6O75340 191 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 CA11O75493 328 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 ECDO95905 644 aaPredicted RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 APOBEC3AP31941 199 aaPredicted RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 PMELP40967 661 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 SNU13P55769 128 aaKnown RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 EFNB3Q15768 340 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 MPV17LQ2QL34 196 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 PCGF3Q3KNV8 242 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 ZNF672Q499Z4 452 aaPredicted RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 NKAPLQ5M9Q1 402 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 CCBE1Q6UXH8 406 aaPredicted RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 TRAPPC6BQ86SZ2 158 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 GVQW1Q8N7I0 195 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 ITLN1Q8WWA0 313 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 EMG1Q92979 244 aaKnown RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 COX4I2Q96KJ9 171 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 SULT4A1Q9BR01 284 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 FAAP24Q9BTP7 215 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 CISD1Q9NZ45 108 aaKnown RBP12.05□□□□□ -0.48
USP39-220ENST00000613444 A6NLC8 198 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 C17orf100A8MU93 164 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 OR7C1O76099 320 aaPredicted RBP12.04□□□□□ -0.48
USP39-220ENST00000613444 DUSP1P28562 367 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 SLC6A1P30531 599 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 CFHR2P36980 270 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 IL13RA2Q14627 380 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 ARL6IP1Q15041 203 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 BRICD5Q6PL45 260 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 LINC00596Q86U02 117 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 WDR13Q9H1Z4 485 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 HRASLSQ9HDD0 168 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 C1orf123Q9NWV4 160 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 IL19Q9UHD0 177 aa12.04□□□□□ -0.48
USP39-220ENST00000613444 SPTAN1Q13813 2472 aaKnown RBP12.04□□□□□ -0.48
USP39-220ENST00000613444 VSTM5A8MXK1 200 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 WNT9BO14905 357 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 FCER2P06734 321 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 CD55P08174 381 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 GSTT2BP0CG30 244 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 FUT3P21217 361 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 GNG2P59768 71 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 ACTBP60709 375 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 ACTG1P63261 375 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 ZNF146Q15072 292 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 Q6P435 159 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 GLCCI1Q86VQ1 547 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 FBXW5Q969U6 566 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 OCSTAMPQ9BR26 566 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 C7orf50Q9BRJ6 194 aaKnown RBP12.03□□□□□ -0.48
USP39-220ENST00000613444 IFT22Q9H7X7 185 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 TAS2R8Q9NYW2 309 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 ZNF107Q9UII5 783 aaPredicted RBP12.03□□□□□ -0.48
USP39-220ENST00000613444 DCHS2Q6V1P9 2916 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 TANC2Q9HCD6 1990 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 MT-ND4P03905 459 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 CSF1P09603 554 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 NAT1P18440 290 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 AP3S2P59780 193 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 TNFAIP6P98066 277 aaPredicted RBP12.03□□□□□ -0.48
USP39-220ENST00000613444 SWI5Q1ZZU3 235 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 PLA1AQ53H76 456 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 MZT2BQ6NZ67 158 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 ZCCHC24Q8N2G6 241 aaKnown RBP12.03□□□□□ -0.48
USP39-220ENST00000613444 DUSP18Q8NEJ0 188 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 DHRS9Q9BPW9 319 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 HDHD3Q9BSH5 251 aaPredicted RBP12.03□□□□□ -0.48
USP39-220ENST00000613444 AK3Q9UIJ7 227 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 DSCAMO60469 2012 aa12.03□□□□□ -0.48
USP39-220ENST00000613444 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.02□□□□□ -0.48
USP39-220ENST00000613444 PYCARD-AS1I3L0S3 204 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 M0R233 179 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 NXPH2O95156 264 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 RCVRNP35243 200 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 FAAP20Q6NZ36 180 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 ACP7Q6ZNF0 438 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 MOGAT3Q86VF5 341 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 TMEM229BQ8NBD8 167 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 OR4S1Q8NGB4 309 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 OR4D10Q8NGI6 311 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 OR10Z1Q8NGY1 313 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 FAM222BQ8WU58 562 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 DEDD2Q8WXF8 326 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 DYRK2Q92630 601 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 SNAPC3Q92966 411 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 DIRC2Q96SL1 478 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 GCM1Q9NP62 436 aa12.02□□□□□ -0.48
USP39-220ENST00000613444 TRAV24A0A0B4J272 114 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 A0A1W2PPR1 153 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 SRRM5B3KS81 715 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms