RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SOX2P48431 317 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 CEBPDP49716 269 aaPredicted RBP13.3□□□□□ -0.28
LSM4-206ENST00000600289 IRF3Q14653 427 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 Q499Y3 187 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 VMO1Q7Z5L0 202 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 FAM58AQ8N1B3 248 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 BATF2Q8N1L9 274 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 Q8N7P7 452 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 PXT1Q8NFP0 134 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 TBC1D15Q8TC07 691 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 ZMAT3Q9HA38 289 aaKnown RBP13.3□□□□□ -0.28
LSM4-206ENST00000600289 HMG20AQ9NP66 347 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 RBFOX1Q9NWB1 397 aaKnown RBP13.3□□□□□ -0.28
LSM4-206ENST00000600289 TAS2R4Q9NYW5 299 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 OR14J1Q9UGF5 321 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 RAB26Q9ULW5 256 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 LSM2Q9Y333 95 aaKnown RBP13.3□□□□□ -0.28
LSM4-206ENST00000600289 TPRKBQ9Y3C4 175 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 MAGEB3O15480 346 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 IGFBP3P17936 291 aaPredicted RBP13.29□□□□□ -0.28
LSM4-206ENST00000600289 FSTP19883 344 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 VHLP40337 213 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 COL10A1Q03692 680 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 DOC2BQ14184 412 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 RNF144BQ7Z419 303 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 BCL6BQ8N143 479 aaPredicted RBP13.29□□□□□ -0.28
LSM4-206ENST00000600289 C22orf15Q8WYQ4 148 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 THRSPQ92748 146 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 RFT1Q96AA3 541 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 SNX22Q96L94 193 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 ZNF48Q96MX3 618 aaPredicted RBP13.29□□□□□ -0.28
LSM4-206ENST00000600289 SPACA5Q96QH8 159 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 ELL3Q9HB65 397 aaPredicted RBP13.29□□□□□ -0.28
LSM4-206ENST00000600289 ONECUT1Q9UBC0 465 aa13.29□□□□□ -0.28
LSM4-206ENST00000600289 TRBV5-7A0A0A0MS05 114 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 IGHV1-69DA0A0B4J2H0 117 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 A0A1W2PPH5 198 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 A0A1W2PQ09 198 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 TRIM77I1YAP6 450 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 GABRPO00591 440 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 ANGPTL7O43827 346 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 HAND1O96004 215 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 IGHV1-69P01742 117 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 BMXP51813 675 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 CAPZA1P52907 286 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 ELP2Q6IA86 826 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 C12orf54Q6X4T0 127 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 ASCL4Q6XD76 172 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 RBMS3Q6XE24 437 aaKnown RBP13.28□□□□□ -0.28
LSM4-206ENST00000600289 OR8H2Q8N162 312 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 SIGLECL1Q8N7X8 197 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 ZFP41Q8N8Y5 198 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 ZDHHC22Q8N966 263 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 Q8NFD4 153 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 OR51A2Q8NGJ7 313 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 OR5D13Q8NGL4 314 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 OR13C5Q8NGS8 318 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 FAM216AQ8WUB2 273 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 METTL8Q9H825 291 aaKnown RBP13.28□□□□□ -0.28
LSM4-206ENST00000600289 TMEM138Q9NPI0 162 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 ESM1Q9NQ30 184 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 C19orf12Q9NSK7 152 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 GLS2Q9UI32 602 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 NOTCH1P46531 2555 aa13.28□□□□□ -0.28
LSM4-206ENST00000600289 IGHV3OR16-10A0A075B7F0 116 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 TMEM82A0PJX8 343 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 PTGES3LE9PB15 166 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 CLDN34H7C241 214 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 PRKACAP17612 351 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 CELP19835 753 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 CRHBPP24387 322 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 LMO1P25800 156 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 MTNR1BP49286 362 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 RPL31P62899 125 aaKnown RBP13.27□□□□□ -0.29
LSM4-206ENST00000600289 PPP3R1P63098 170 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 GUCA2AQ02747 115 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 BLMHQ13867 455 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 NCR3LG1Q68D85 454 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 BRD3OSQ6XYD6 125 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 C17orf107Q6ZR85 190 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 OR52N4Q8NGI2 321 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 OR5D18Q8NGL1 313 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 TNFRSF14Q92956 283 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 LHX4Q969G2 390 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 IL36RNQ9UBH0 155 aa13.27□□□□□ -0.29
LSM4-206ENST00000600289 RGS10O43665 173 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 RBP4P02753 201 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 TMEM225BP0DP42 221 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 PRTN3P24158 256 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 BDKRB2P30411 391 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 MEF2CQ06413 473 aaPredicted RBP13.26□□□□□ -0.29
LSM4-206ENST00000600289 GPR50Q13585 617 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 SPHARQ15513 63 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 RBM48Q5RL73 367 aaKnown RBP13.26□□□□□ -0.29
LSM4-206ENST00000600289 CDH26Q8IXH8 852 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 FAM185AQ8N0U4 392 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 ASCC1Q8N9N2 400 aaKnown RBP13.26□□□□□ -0.29
LSM4-206ENST00000600289 SGCDQ92629 289 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 C1orf147Q96MC9 270 aaPredicted RBP13.26□□□□□ -0.29
LSM4-206ENST00000600289 DERL3Q96Q80 235 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms