RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RFT1Q96AA3 541 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 CDCA4Q9BXL8 241 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 HMG20AQ9NP66 347 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 OR14J1Q9UGF5 321 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 TENM1Q9UKZ4 2725 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 KIAA2026Q5HYC2 2103 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 RNASEK-C17orf49H0YIS7 233 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 MYL12BO14950 172 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 ANGPTL7O43827 346 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 GPX5O75715 221 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 HAND1O96004 215 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 CYB5AP00167 134 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 ALDOBP05062 364 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 OCM2P0CE71 109 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 IGFBP3P17936 291 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-213ENST00000598355 FSTP19883 344 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 RAB3AP20336 220 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 PRTN3P24158 256 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 SOX2P48431 317 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 IRF3Q14653 427 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 YIF1BQ5BJH7 314 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 IZUMO2Q6UXV1 221 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 C17orf107Q6ZR85 190 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 OR8H2Q8N162 312 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 C11orf42Q8N5U0 333 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 PXT1Q8NFP0 134 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 OR13C5Q8NGS8 318 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 LHX4Q969G2 390 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 METTL8Q9H825 291 aaKnown RBP13.23□□□□□ -0.29
TRIM28-213ENST00000598355 TAS2R4Q9NYW5 299 aa13.23□□□□□ -0.29
TRIM28-213ENST00000598355 LSM2Q9Y333 95 aaKnown RBP13.23□□□□□ -0.29
TRIM28-213ENST00000598355 TRBV5-7A0A0A0MS05 114 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 MDFIC2A0A1B0GVS7 189 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 A0A1W2PQ09 198 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 TMEM82A0PJX8 343 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 H0YHG0 523 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 ATP6V1G2O95670 118 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 HCKP08631 526 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 HSPA13P48723 471 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 DLX6P56179 175 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 RPL31P62899 125 aaKnown RBP13.22□□□□□ -0.29
TRIM28-213ENST00000598355 GUCA2AQ02747 115 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 DEFB112Q30KQ8 113 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 Q499Y3 187 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 ELP2Q6IA86 826 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 HCP5Q6MZN7 132 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 FIP1L1Q6UN15 594 aaKnown RBP13.22□□□□□ -0.29
TRIM28-213ENST00000598355 TCF23Q7RTU1 214 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 PIP4P2Q8N4L2 257 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 ZFP41Q8N8Y5 198 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 Q8NFD4 153 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 OR5D18Q8NGL1 313 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 SGCDQ92629 289 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 CPNE2Q96FN4 548 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-213ENST00000598355 SNX22Q96L94 193 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 DUSP21Q9H596 190 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 SIRT7Q9NRC8 400 aa13.22□□□□□ -0.29
TRIM28-213ENST00000598355 GABRPO00591 440 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 PSPNO60542 156 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 RNASE1P07998 156 aaKnown RBP13.21□□□□□ -0.29
TRIM28-213ENST00000598355 OCMP0CE72 109 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-213ENST00000598355 PRKACAP17612 351 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 LMO1P25800 156 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 COMPP49747 757 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-213ENST00000598355 CAPZA1P52907 286 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 ZNF273Q14593 569 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 NCR3LG1Q68D85 454 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 TMEM200BQ69YZ2 307 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 ASCL4Q6XD76 172 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 RBMS3Q6XE24 437 aaKnown RBP13.21□□□□□ -0.29
TRIM28-213ENST00000598355 LDLRAD3Q86YD5 345 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 FAM185AQ8N0U4 392 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 ASCC1Q8N9N2 400 aaKnown RBP13.21□□□□□ -0.29
TRIM28-213ENST00000598355 OR52N4Q8NGI2 321 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 TBC1D15Q8TC07 691 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 NOX4Q9NPH5 578 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 TMEM138Q9NPI0 162 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 ERGIC3Q9Y282 383 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 PCDHGB5Q9Y5G0 923 aa13.21□□□□□ -0.29
TRIM28-213ENST00000598355 TMEM89A2RUT3 159 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 INMTO95050 263 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 RBP4P02753 201 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 OR3A1P47881 315 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 DLX1P56177 255 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 KLRD1Q13241 179 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 SLC9A3R2Q15599 337 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 Q6YL49 198 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 OR5D13Q8NGL4 314 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 MYDGFQ969H8 173 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 MND1Q9BWT6 205 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 SCN3BQ9NY72 215 aa13.2□□□□□ -0.3
TRIM28-213ENST00000598355 TRAV8-7A0A075B6U6 113 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 C17orf98A8MV24 154 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 OR2H2O95918 312 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 CSN2P05814 226 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 CELP19835 753 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 CRHBPP24387 322 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 DUSP1P28562 367 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 ERP29P30040 261 aaKnown RBP13.19□□□□□ -0.3
TRIM28-213ENST00000598355 MTNR1BP49286 362 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms