RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SAXO1Q8IYX7 474 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 FAM185AQ8N0U4 392 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 ZSCAN4Q8NAM6 433 aaPredicted RBP11.4□□□□□ -0.58
UPF1-205ENST00000598209 LHX4Q969G2 390 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 ORAI1Q96D31 301 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 CPNE2Q96FN4 548 aaPredicted RBP11.4□□□□□ -0.58
UPF1-205ENST00000598209 CNBD2Q96M20 576 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 ZNF48Q96MX3 618 aaPredicted RBP11.4□□□□□ -0.58
UPF1-205ENST00000598209 GPER1Q99527 375 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 MND1Q9BWT6 205 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 FAM234AQ9H0X4 552 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 HMG20AQ9NP66 347 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 C19orf12Q9NSK7 152 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 PCDHGB5Q9Y5G0 923 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 K7N7A8 449 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 M0R1W7 72 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 ZNF737O75373 536 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 CD1AP06126 327 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 TMEM225BP0DP42 221 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 DUSP1P28562 367 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 BPIFB3P59826 476 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 RPL31P62899 125 aaKnown RBP11.39□□□□□ -0.59
UPF1-205ENST00000598209 PPP3R1P63098 170 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 BDH1Q02338 343 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 IRF3Q14653 427 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 RBMS3Q6XE24 437 aaKnown RBP11.39□□□□□ -0.59
UPF1-205ENST00000598209 Q8N7P7 452 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 OR4M1Q8NGD0 313 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 OR52N4Q8NGI2 321 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 OR5M11Q96RB7 305 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 C19orf24Q9BVV8 132 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 DUSP21Q9H596 190 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 SEBOXQ9HB31 216 aaPredicted RBP11.39□□□□□ -0.59
UPF1-205ENST00000598209 ESM1Q9NQ30 184 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 SIRT7Q9NRC8 400 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 GLS2Q9UI32 602 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 RAB26Q9ULW5 256 aa11.39□□□□□ -0.59
UPF1-205ENST00000598209 COL6A5A8TX70 2615 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 IGHV1-69DA0A0B4J2H0 117 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 TMEM82A0PJX8 343 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 GABRPO00591 440 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 RGS10O43665 173 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 IGHV1-69P01742 117 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 ALDOBP05062 364 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 IGFBP3P17936 291 aaPredicted RBP11.38□□□□□ -0.59
UPF1-205ENST00000598209 CRHBPP24387 322 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 BDKRB2P30411 391 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 DLX1P56177 255 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 ACSM1Q08AH1 577 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 BLMHQ13867 455 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 ZNF146Q15072 292 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 SPHARQ15513 63 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 SPIN3Q5JUX0 258 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 DDI2Q5TDH0 399 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 PDZD9Q8IXQ8 264 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 ZDHHC22Q8N966 263 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 PXT1Q8NFP0 134 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 TNFAIP8L1Q8WVP5 186 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 SNX22Q96L94 193 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 OR14A2Q96R54 314 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 NKX3-1Q99801 234 aaPredicted RBP11.38□□□□□ -0.59
UPF1-205ENST00000598209 RHOFQ9HBH0 211 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 TMEM138Q9NPI0 162 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 GSTK1Q9Y2Q3 226 aa11.38□□□□□ -0.59
UPF1-205ENST00000598209 LSM2Q9Y333 95 aaKnown RBP11.38□□□□□ -0.59
UPF1-205ENST00000598209 RRP15Q9Y3B9 282 aaKnown RBP11.38□□□□□ -0.59
UPF1-205ENST00000598209 TRAV8-7A0A075B6U6 113 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 TRBV5-7A0A0A0MS05 114 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 MDFIC2A0A1B0GVS7 189 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 A0A1W2PPK0 400 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 TRIM77I1YAP6 450 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 SH2D1BO14796 132 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 GPX5O75715 221 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 FSTP19883 344 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 GABRR1P24046 479 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 EDDM3BP56851 147 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 PRB3Q04118 309 aaPredicted RBP11.37□□□□□ -0.59
UPF1-205ENST00000598209 MED22Q15528 200 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 DEFB112Q30KQ8 113 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 KIAA2026Q5HYC2 2103 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 RBM48Q5RL73 367 aaKnown RBP11.37□□□□□ -0.59
UPF1-205ENST00000598209 TMEM200BQ69YZ2 307 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 METAP1DQ6UB28 335 aaPredicted RBP11.37□□□□□ -0.59
UPF1-205ENST00000598209 C17orf107Q6ZR85 190 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 C1orf122Q6ZSJ8 110 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 GDPD3Q7L5L3 318 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 OR8H2Q8N162 312 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 OR5D13Q8NGL4 314 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 TBC1D15Q8TC07 691 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 ZFAND2BQ8WV99 257 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 DERL3Q96Q80 235 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 CCDC90BQ9GZT6 254 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 FAM192AQ9GZU8 254 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 METTL8Q9H825 291 aaKnown RBP11.37□□□□□ -0.59
UPF1-205ENST00000598209 EXOSC4Q9NPD3 245 aaKnown RBP11.37□□□□□ -0.59
UPF1-205ENST00000598209 CKLFQ9UBR5 152 aa11.37□□□□□ -0.59
UPF1-205ENST00000598209 A0A1W2PPH5 198 aa11.36□□□□□ -0.59
UPF1-205ENST00000598209 DNAJC9-AS1A6NH13 148 aa11.36□□□□□ -0.59
UPF1-205ENST00000598209 RNASEK-C17orf49H0YIS7 233 aa11.36□□□□□ -0.59
UPF1-205ENST00000598209 SIRPB1O00241 398 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms