RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FRRS1LQ9P0K9 344 aa10.09□□□□□ -0.79
TRIM28-212ENST00000597995 EXOGQ9Y2C4 368 aaKnown RBP10.09□□□□□ -0.79
TRIM28-212ENST00000597995 POLDIP2Q9Y2S7 368 aa10.09□□□□□ -0.79
TRIM28-212ENST00000597995 IGKV1-9A0A0C4DH69 117 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 FAM230AA0A1W2PPH8 454 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 PEX14O75381 377 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 RBP4P02753 201 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 TK1P04183 234 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 RAB13P51153 203 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 DLX6P56179 175 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF91Q05481 1191 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 IL24Q13007 206 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF273Q14593 569 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 MEDAGQ5VYS4 303 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 FOXB2Q5VYV0 432 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 FDX2Q6P4F2 183 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 RNF144BQ7Z419 303 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 PQLC1Q8N2U9 271 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 OR11H6Q8NGC7 330 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 OR4M1Q8NGD0 313 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 OR13D1Q8NGV5 346 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 OR10AC1Q8NH08 325 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 RHOXF1Q8NHV9 184 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 C9orf16Q9BUW7 83 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 PKIBQ9C010 78 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 CHST5Q9GZS9 411 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 ORC6Q9Y5N6 252 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 GMPPBQ9Y5P6 360 aa10.08□□□□□ -0.8
TRIM28-212ENST00000597995 NBEAL2Q6ZNJ1 2754 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 DNAH3Q8TD57 4116 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 DAPL1A0PJW8 107 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 ODF3BA8MYP8 253 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 EBAG9O00559 213 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 SLC16A6O15403 523 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 NXPH2O95156 264 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 ALDOBP05062 364 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 ARG1P05089 322 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 SSX2Q16385 188 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 VAX1Q5SQQ9 334 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF626Q68DY1 528 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF782Q6ZMW2 699 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-212ENST00000597995 OR51A4Q8NGJ6 313 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 APH1BQ8WW43 257 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 PELI1Q96FA3 418 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 ISG20L2Q9H9L3 353 aaKnown RBP10.07□□□□□ -0.8
TRIM28-212ENST00000597995 AMBNQ9NP70 447 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 MYRFQ9Y2G1 1151 aa10.07□□□□□ -0.8
TRIM28-212ENST00000597995 OR4C45A6NMZ5 311 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 H3BUI4 141 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 J3QLW9 94 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 K7N7A8 449 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF737O75373 536 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 INMTO95050 263 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ISG15P05161 165 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 UBCP0CG48 685 aaKnown RBP10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF728P0DKX0 622 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 DBTP11182 482 aaKnown RBP10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ZNF19P17023 458 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 CD33P20138 364 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 FUT6P51993 359 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ACTC1P68032 377 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ACTA1P68133 377 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 CD83Q01151 205 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 PLA1AQ53H76 456 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ZBTB49Q6ZSB9 765 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 SLC25A26Q70HW3 274 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 FAM220AQ7Z4H9 259 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 KCTD20Q7Z5Y7 419 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 LHFPL3Q86UP9 236 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 TMEM219Q86XT9 240 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ACBD7Q8N6N7 88 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 CCDC54Q8NEL0 328 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 SLAMF9Q96A28 289 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 FGGYQ96C11 551 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 C10orf35Q96D05 121 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 C4orf36Q96KX1 117 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 ADI1Q9BV57 179 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 PLEKHA1Q9HB21 404 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.06□□□□□ -0.8
TRIM28-212ENST00000597995 FAM118AQ9NWS6 357 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 IL36RNQ9UBH0 155 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 OR14J1Q9UGF5 321 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 SLC7A11Q9UPY5 501 aa10.06□□□□□ -0.8
TRIM28-212ENST00000597995 LOC100130705A0A1B0GUX0 176 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 E9PI62 339 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 GATBO75879 557 aaKnown RBP10.05□□□□□ -0.8
TRIM28-212ENST00000597995 IGHA1P01876 353 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 CHRM2P08172 466 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 HTR1AP08908 422 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 IGHV1-8P0DP01 117 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 IGLL1P15814 213 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 ATF1P18846 271 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 AZGP1P25311 298 aaKnown RBP10.05□□□□□ -0.8
TRIM28-212ENST00000597995 VDAC2P45880 294 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-212ENST00000597995 NPBWR2P48146 333 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 CCR9P51686 369 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 BLCAPP62952 87 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 COL10A1Q03692 680 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 GALEQ14376 348 aa10.05□□□□□ -0.8
TRIM28-212ENST00000597995 ARSJQ5FYB0 599 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms